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brickmanlab / cat-python Public

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v1.1.0#3

Merged

matq007 merged 24 commits intomasterbrickmanlab/cat-python:masterfrom

polarsbrickmanlab/cat-python:polarsCopy head branch name to clipboard

Sep 17, 2024

Conversation Commits24 (24)Checks Files changed

Merged

v1.1.0#3
matq007 merged 24 commits intomasterfrom
polars

Commits

Commits on Aug 27, 2024

feat: support feature file
matq007
committed
fix: support for saving preprocessed datatsets
matq007
committed
fix: features file has to read gene names as lowercased
matq007
committed
docs: include API calls and example notebook
matq007
committed
docs: correct issue tracker links
matq007
committed

Commits on Sep 16, 2024

feat: use uv for package management
matq007
committed
docs: updated documentation
matq007
committed
feat: warning message if scanpy is missing
matq007
committed
feat: remove scanpy dependency
matq007
committed
fix: remove extra dev dependencies for ci build process
matq007
committed
fix: remove scanpy dependency
matq007
committed
fix: remove unsused format flag
matq007
committed
feat: export CAT results into mutliple formats with sankey plots
matq007
committed

Commits on Sep 17, 2024

fix: missing plotly dependency
matq007
committed
fix: grammar in logging message
matq007
committed
fix: ruff linting
matq007
committed
fix: supress RuntimeWarning for median normalization
matq007
committed
fix: cat comparisons were flipped
matq007
committed
fix: sankey plot was missing links
matq007
committed
chore: remove pytest example
matq007
committed
chore: merge with HEAD
matq007
committed
chore: remove missed files from merging
matq007
committed
fix: calling CAT in notebooks
matq007
committed
chore: format config for readthedocs
matq007
committed

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