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HHMI Janelia Research Campus
- Washington DC metro area
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pom-scijava Public
Forked from scijava/pom-scijavaFriendly base POM for all SciJava-based software
Shell The Unlicense UpdatedOct 18, 2024 -
i2k2020-imglib2-advanced Public
Forked from saalfeldlab/i2k2020-imglib2-advancedJava BSD 2-Clause "Simplified" License UpdatedOct 16, 2024 -
imglib2 Public
Forked from imglib/imglib2A generic next-generation Java library for image processing
Java Other UpdatedOct 9, 2024 -
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Bikeshed Other UpdatedOct 8, 2024 -
numcodecs Public
Forked from zarr-developers/numcodecsA Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
Python MIT License UpdatedAug 24, 2024 -
bigdataviewer-core Public
Forked from bigdataviewer/bigdataviewer-coreImgLib2-based viewer for registered SPIM stacks and more
Java BSD 2-Clause "Simplified" License UpdatedJul 9, 2024 -
bigdataviewer_fiji Public
Forked from bigdataviewer/bigdataviewer_fijiFiji plugins for starting BigDataViewer and exporting data.
Java GNU General Public License v3.0 UpdatedJul 8, 2024 -
ParticleGraph Public
Forked from allierc/ParticleGraphGraph fitting particle trajectories
Python GNU General Public License v3.0 UpdatedJun 18, 2024 -
imglib2-realtransform Public
Forked from imglib/imglib2-realtransform -
ossi-website Public
Forked from JaneliaSciComp/ossi-websiteWebsite showcasing Janelia Open Science Software Intiative (OSSI) supported software projects and other software developed at Janelia.
Astro BSD 3-Clause "New" or "Revised" License UpdatedMay 21, 2024 -
n5-utils Public
Forked from saalfeldlab/n5-utilssimple standalone BigDataViewer for multiple N5 (or HDF5) datasets
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imglib2-algorithm Public
Forked from imglib/imglib2-algorithmImage processing algorithms for ImgLib2
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bigdataviewer-biop-tools Public
Forked from BIOP/bigdataviewer-biop-toolsAnother repo for bdv tools.
Java UpdatedFeb 12, 2024 -
bigdataviewer-vistools Public
Forked from bigdataviewer/bigdataviewer-vistoolsHelpers to use BigDataViewer as a quick visualization tool in other projects.
Java BSD 2-Clause "Simplified" License UpdatedJan 8, 2024 -
JaneliaDataStandards Public
Forked from JaneliaSciComp/JaneliaDataStandardsA central hub for Janelia's bioimaging schemas, standards, and data formats.
BSD 3-Clause "New" or "Revised" License UpdatedNov 28, 2023 -
ijp-imagetoatlas Public
Forked from BIOP/ijp-imagetoatlas2D sections to 3D atlas registration with Fiji and QuPath
Java UpdatedSep 22, 2023 -
Materials for the advanced image registration section of the "Advanced methods in bioimage analysis" EMBO 2023 course
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mobie-io Public
Forked from mobie/mobie-ioJava BSD 2-Clause "Simplified" License UpdatedAug 18, 2023 -
mobie-viewer-fiji Public
Forked from mobie/mobie-viewer-fijiJava BSD 2-Clause "Simplified" License UpdatedAug 17, 2023 -
n5-viewer Public
Forked from saalfeldlab/n5-viewerBDV-based tool for visualizing multichannel multiscale N5 datasets.
Java GNU General Public License v3.0 UpdatedAug 15, 2023 -
multiview-reconstruction Public
Forked from PreibischLab/multiview-reconstructionSoftware for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
Java GNU General Public License v2.0 UpdatedJul 31, 2023 -
imglib2-ij Public
Forked from imglib/imglib2-ijTranslation between ImgLib & ImageJ data structures (both 1.x and 2)
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ome-ngff-java Public
Forked from ome/ome-ngff-javaMetadata stubs of the NGFF specification in Java
1 UpdatedJun 14, 2023 -
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imglib2-roi Public
Forked from imglib/imglib2-roiRegions of interest (ROIs) and labelings for ImgLib2
Java Other UpdatedMay 10, 2023 -
openorganelle-blog Public
Forked from janelia-cellmap/openorganelle-blogPeriodic content for openorganelle
BSD 3-Clause "New" or "Revised" License UpdatedMar 13, 2023 -
fiji-scripts Public
Forked from axtimwalde/fiji-scriptsA wild collection of useful and partially broken scripts for Fiji and TrakEM2
Groovy Other UpdatedMar 10, 2023 -
Beamer-Theme-Janelia Public
Forked from saalfeldlab/Beamer-Theme-JaneliaA minimalist and modern Beamer theme
TeX MIT License UpdatedJan 30, 2023 -
imglib2-cache Public
Forked from imglib/imglib2-cacheCache interfaces and java.lang.ref based implementation.
Other UpdatedJan 3, 2023