Error only when ploting interactive

[Artifice120]

Thanks for such a convenient visualization tool for KEGG enrichment

Unfortunately when I run the following command:

KEGG-decoder --input ko-list-fmt-fmt.txt --output pan-small-rick8 --newick rickkys.newick --vizoption interactive

I recieve this error :

Traceback (most recent call last):
  File "/lustre/isaac/scratch/jtorre28/enviro/mamba/micro/envs/kegg-dc/bin/KEGG-decoder", line 8, in <module>
    sys.exit(main())
  File "/lustre/isaac/scratch/jtorre28/enviro/mamba/micro/envs/kegg-dc/lib/python3.6/site-packages/KEGGDecoder/KEGG_decoder.py", line 1714, in main
    plotly_viz(genome, os.path.splitext(filehandle)[0] + ".html")
  File "/lustre/isaac/scratch/jtorre28/enviro/mamba/micro/envs/kegg-dc/lib/python3.6/site-packages/KEGGDecoder/Plotly_viz.py", line 16, in plotly_viz
    Correlation_genome_df = hClust_correlation(genome_df)
  File "/lustre/isaac/scratch/jtorre28/enviro/mamba/micro/envs/kegg-dc/lib/python3.6/site-packages/KEGGDecoder/KEGG_clustering.py", line 23, in hClust_correlation
    linkage_matrix = linkage(genome_df, method='single', metric='correlation')
  File "/lustre/isaac/scratch/jtorre28/enviro/mamba/micro/envs/kegg-dc/lib/python3.6/site-packages/scipy/cluster/hierarchy.py", line 1061, in linkage
    raise ValueError("The condensed distance matrix must contain only "
ValueError: The condensed distance matrix must contain only finite values.

I have removed spacial characters from the names to be safe as follows

GCA000012385            K09773
GCA000012385            K03671
GCA000012385            K09691
GCA000012385            K09690
GCA000012385
GCA000012385            K03503
GCA000012385
GCA000012385
GCA000012385
GCA000012385            K00995

Even stranger all other plots, including the scatter gram, were able to plot correctly.

Many thanks for any input you can give

[Artifice120]

Intermediate text file

Function        glycolysis      gluconeogenesis TCA Cycle       NAD(P)H-quinone oxidoreductase  NADH-quinone oxidoreductase     Na-NADH-ubiquinone oxidoreductase       F-type ATPase   V-type ATPase   Cytochrome c oxidase     Ubiquinol-cytochrome c reductase        Cytochrome o ubiquinol oxidase  Cytochrome aa3-600 menaquinol oxidase   Cytochrome c oxidase, cbb3-type Cytochrome bd complex   RuBisCo CBB Cycle       rTCA Cycle       Wood-Ljungdahl  3-Hydroxypropionate Bicycle     4-Hydroxybutyrate/3-hydroxypropionate   pectinesterase  diacetylchitobiose deacetylase  glucoamylase    D-galacturonate epimerase       exo-poly-alpha-galacturonosidase oligogalacturonide lyase        cellulase       exopolygalacturonase    chitinase       basic endochitinase B   bifunctional chitinase/lysozyme beta-N-acetylhexosaminidase     D-galacturonate isomerase        alpha-amylase   beta-glucosidase        pullulanase     ammonia oxidation (amo/pmmo)    hydroxylamine oxidation nitrite oxidation       dissim nitrate reduction        DNRA    nitrite reduction        nitric oxide reduction  nitrous-oxide reduction nitrogen fixation       hydrazine dehydrogenase hydrazine synthase      dissimilatory sulfate < > APS   dissimilatory sulfite < > APS   dissimilatory sulfite < > sulfide        thiosulfate oxidation   alt thiosulfate oxidation tsdA  alt thiosulfate oxidation doxAD sulfur reductase sreABC thiosulfate/polysulfide reductase       sulfhydrogenase sulfur disproportionation        sulfur dioxygenase      sulfite dehydrogenase   sulfite dehydrogenase (quinone) sulfide oxidation       sulfur assimilation     DMSP demethylation      DMS dehydrogenase       DMSO reductase   NiFe hydrogenase        ferredoxin hydrogenase  membrane-bound hydrogenase      hydrogen:quinone oxidoreductase NAD-reducing hydrogenase        NADP-reducing hydrogenase       NiFe hydrogenase Hyd-1  thiamin biosynthesis     riboflavin biosynthesis cobalamin biosynthesis  transporter: vitamin B12        transporter: thiamin    transporter: urea       transporter: phosphonate        transporter: phosphate  Flagellum        Chemotaxis      Methanogenesis via methanol     Methanogenesis via acetate      Methanogenesis via dimethylsulfide, methanethiol, methylpropanoate      Methanogenesis via methylamine  Methanogenesis via trimethylamine        Methanogenesis via dimethylamine        Methanogenesis via CO2  Coenzyme B/Coenzyme M regeneration      Coenzyme M reduction to methane Soluble methane monooxygenase   methanol dehydrogenase   alcohol oxidase dimethylamine/trimethylamine dehydrogenase      Photosystem II  Photosystem I   Cytochrome b6/f complex anoxygenic type-II reaction center      anoxygenic type-I reaction centerRetinal biosynthesis    Retinal from apo-carotenals     Entner-Doudoroff Pathway        Mixed acid: Lactate     Mixed acid: Formate     Mixed acid: Formate to CO2 & H2 Mixed acid: Acetate     Mixed acid: Ethanol, Acetate to Acetylaldehyde   Mixed acid: Ethanol, Acetyl-CoA to Acetylaldehyde (reversible)  Mixed acid: Ethanol, Acetylaldehyde to Ethanol  Mixed acid: PEP to Succinate via OAA, malate & fumarate Naphthalene degradation to salicylate    Biofilm PGA Synthesis protein   Colanic acid and Biofilm transcriptional regulator      Biofilm regulator BssS  Colanic acid and Biofilm protein A      Curli fimbriae biosynthesis      Adhesion        Competence-related core components      Competence-related related components   Competence factors      Glyoxylate shunt        Anaplerotic genes       Sulfolipid biosynthesis C-P lyase cleavage PhnJ  CP-lyase complex        CP-lyase operon Type I Secretion        Type III Secretion      Type II Secretion       Type IV Secretion       Type VI Secretion       Sec-SRP Twin Arginine Targeting Type Vabc Secretion      Serine pathway/formaldehyde assimilation        Arsenic reduction       Cobalt transporter CbiMQ        Cobalt transporter CbtA Cobalt transporter CorA Nickel ABC-type substrate-binding NikA   Copper transporter CopA Ferrous iron transporter FeoB   Ferric iron ABC-type substrate-binding AfuA     Fe-Mn transporter MntH  histidine       arginine        lysine  serine  threonine       asparagine       glutamine       cysteine        glycine proline alanine valine  methionine      phenylalanine   isoleucine      leucine tryptophan      tyrosine        aspartate       glutamate       PET degradation starch/glycogen synthesis        starch/glycogen degradation     polyhydroxybutyrate synthesis   bidirectional polyphosphate     carotenoids backbone biosynthesis       end-product astaxanthin end-product nostoxanthin end-product zeaxanthin diglucoside      end-product myxoxanthophylls    staphyloaxanthin biosynthesis   mevalonate pathway      MEP-DOXP pathway
GCA000012385     0.11    0.0     0.62    0       0.98    0.0     0.875   0       0.75    0.99    0       0       0       1.0     0       0.0     0       0.0     0.12    0.1     0       0       0       0       0        0       0       0       0       0       0       1       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.0      0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.09    0.0     0.0     0       0        0.0     0       0       0.0     0.0     0       0       0       0       0       0       0       0.0     0       0       0       0       0       0       0       0       0       0       0       0       0.0      0       0       0       0       0       0       0       0.14550000000000002     0.0     0       0       0       0       0       0       0       0       0       0       0.25    0       0       0       0.09     0.33    0       0       0.5810000000000001      0       0.9129999999999999      0.5     0       0.2     0       0       0       1.0     0       0       0       0       0       0       0       0       1        0       0       1       0       1       0       0       0.166   0       0       0.166   0.25    0       0       1       1       0       0       0       0.8340000000000001      0.5     0       0       0        0       0       0       0       0
GCA964026435     0.0     0.0     0.0     0       0.14    0.0     0.125   0       0       0.33    0       0       0       0       0       0.0     0       0.0     0.0     0.0     0       0       0       0       0        0       0       0       0       0       0       1       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.0      0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.09    0.0     0.0     0       0        0.0     0       0       0.0     0.0     0       0       0       0       0       0       0       0.0     0       0       0       0       0       0       0       0       0       0       0       0       0.0      0       0       0       0       0       0       0       0       0.0     0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0        0       0.166   0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0        0       0       0       0       0       0       0       0       0       0       0       0       0       0.167   0       0       0       0       0       0       0       0       0
GCA964026455     0.0     0.0     0.0     0       0.21    0.17    0.375   0       0       0.33    0       0       0       0       0       0.0     0       0.0     0.0     0.0     0       0       0       0       0        0       0       0       0       0       0       1       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.0      0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.09    0.0     0.0     0       0        0.0     0       0       0.0     0.0     0       0       0       0       0       0       0       0.0     0       0       0       0       0       0       0       0       0       0       0       0       0.0      0       0       0       0       0       0       0       0       0.0     0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.33    0        0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0        0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0
GCA964026465     0.0     0.0     0.0     0       0.0     0.0     0       0       0       0       0       0       0       0       0       0.0     0       0.0     0.0     0.0     0       0       0       0       0        0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.0      0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.0     0.0     0.0     0       0        0.0     0       0       0.0     0.0     0       0       0       0       0       0       0       0.0     0       0       0       0       0       0       0       0       0       0       0       0       0.0      0       0       0       0       0       0       0       0       0.0     0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0        0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0        0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0
GCA964030725     0.0     0.0     0.0     0       0.14    0.0     0.125   0       0.25    0       0       0       0       0.5     0       0.0     0       0.0     0.0     0.0     0       0       0       0       0        0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.0      0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.09    0.0     0.0     0       0        0.0     0       0       0.0     0.0     0       0       0       0       0       0       0       0.0     0       0       0       0       0       0       0       0       0       0       0       0       0.0      0       0       0       0       0       0       0       0       0.0     0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.09    0.33    0        0       0.166   0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0        0       0       0       0       0       0       0       0       0       0       0       0       0       0.167   0       0       0       0       0       0       0       0       0
GCA964030815     0.0     0.0     0.0     0       0.0     0.0     0       0       0       0       0       0       0       0       0       0.0     0       0.0     0.0     0.0     0       0       0       0       0        0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.0      0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.0     0.0     0.0     0       0        0.0     0       0       0.0     0.0     0       0       0       0       0       0       0       0.0     0       0       0       0       0       0       0       0       0       0       0       0       0.0      0       0       0       0       0       0       0       0       0.0     0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0        0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0        0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0
GCA964291875     0.0     0.0     0.0     0       0.21    0.0     0.375   0       0       0       0       0       0       0       0       0.0     0       0.0     0.0     0.0     0       0       0       0       0        0       0       0       0       0       0       1       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.0      0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.09    0.0     0.0     0       0        0.0     0       0       0.0     0.0     0       0       0       0       0       0       0       0.0     0       0       0       0       0       0       0       0       0       0       0       0       0.0      0       0       0       0       0       0       0       0       0.0     0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.09    0       0        0       0.083   0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0        0       0.166   0       0       0.166   0.25    0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0
Rick510  0.0     0.0     0.0     0       0.0     0.0     0       0       0.25    0.99    0       0       0       0.5     0       0.0     0       0.0     0.0     0.1     0       0       0       0       0       0        0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.0     0        0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0.09    0.0     0.12    0       0       0.0      0       0       0.0     0.0     0       0       0       0       0       0       0       0.0     0       0       0       0       0       0       0       0       0       0       0       0       0.0     0        0       0       0       0       0       0       0       0.0     0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0        0.083   0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0        0       0       0       0       0       0       0       0       0       0       0       0       0.334   0       0       0       0       0       0       0       0       0