annotation-hub

A BioThings-Hub to aggregate knowledge graph node-level data for our core-components services

Running

In order to run you need to setup both a config.py and config_hub.py file in the root directory of the hub. Examples of these can be found from the biothings.api

Once they're setup you start the hub by running the following command at the root of the directory

PYTHONPATH=. python3 ./bin/hub.py

Plugins

We have 3 groups of plugins based off which web api they feed

NodeNormalization

The corresponding web api can be found here

plugins

• ~/plugins/nodenorm

NameResolution

The corresponding web api can be found here

plugins

• ~/plugins/nameres

NodeAnnotator

The corresponding web api can be found here

plugins

• ~/plugins/atc
• ~/plugins/multiomics_clinicaltrials_kp
• ~/plugins/multiomics_drug_approvals_kp
• ~/plugins/pubmed_metadata (standalone PubMed index)