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Commits on Apr 29, 2013

• Ensure exit status of 1 if given invalid options or index files are not found.

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  Rob Davies

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  0aa7e0a

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Commits on Feb 23, 2013

• cleanup index loading code

  lh3

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  cfa7165

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Commits on Oct 26, 2012

• r132: optionally copy FASTA/Q comment to SAM

  lh3

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  292f906

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Commits on Jun 28, 2012

• r128: more conservative chaining filter

  lh3

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  f44edd4

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Commits on Apr 18, 2012

• r115: added -I and -S to bwasw

  lh3

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  cd81868

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Commits on Apr 2, 2012

• debugging code: bwasw has a rare bug

  lh3

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  173b93d

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Commits on Mar 29, 2012

• Tim's suggestion suffix file name with .64

  lh3

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  bdc953c

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Commits on Nov 24, 2011

• reordering BWA-SW command-line prompt

  

  Heng Li

  committed
  9f84384

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• removed a useless bwa-sw CMD option

  

  Heng Li

  committed
  b17b657

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Commits on Nov 5, 2011

• bwasw: read and align two fastq at a time

  

  Heng Li

  committed
  06687a3

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Commits on Oct 24, 2011

• this is better; but still buggy

  

  Heng Li

  committed
  4c43c59

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• not segfault immediately; but buggy

  

  Heng Li

  committed
  29c3acf

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Commits on Jan 22, 2011

• Added recommendation for PacBio reads

  

  Heng Li

  committed
  7fd8948

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• fixed a typo in help

  

  Heng Li

  committed
  dac5395

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Commits on Jan 14, 2011

• Update to the latest modfication 0.5.9rc1-2. Update ChangeLog

  

  Heng Li

  committed
  5e30884

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• Imported from my local bwa repository, the master repository.

  

  Heng Li

  committed
  007c3eb

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