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feat: add coverage #81

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feat: add coverage #81

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9fd6258
add merge function
Jan 28, 2025
6604486
add placeholder suffix
Jan 28, 2025
38907b9
fix test typo
Jan 28, 2025
6c01427
add merge test file
Jan 28, 2025
a630c1c
add missing import
Jan 29, 2025
2e9c7fe
allow reading parquet directory
Jan 31, 2025
5e7728c
fix type difference
Feb 8, 2025
75bf6ef
change start_end casting position
Feb 8, 2025
5b32fdb
fix input.csv so that it does not contain start==end (assumption of t…
Feb 8, 2025
d08bf0c
fix expected merge
Feb 8, 2025
df4e356
merge operation changes
Feb 8, 2025
791371d
cast final merge result to original types
Feb 8, 2025
fb40f74
fix placement of reading schema for the merge function
Feb 8, 2025
cb375c4
add workaround for bioframe type changes
Feb 8, 2025
e1367d1
add cluster function
Feb 9, 2025
531a67c
fix expected table types
Feb 9, 2025
0254864
add coverage and support returning datafusion dataframes
Feb 11, 2025
3d00948
Merge branch 'master' into coverage
zkeram Feb 11, 2025
1197f10
fix polars_ext closing parentheses
Feb 11, 2025
75ecb9f
remove unnecessary if
Feb 11, 2025
e0421e7
close delimeter
Feb 11, 2025
e46eab0
assure that if coverage's on_cols=None, then the underlying merge's o…
Feb 11, 2025
462fcce
add datafusion.DataFrame as accepted input
Feb 11, 2025
a5c4ebf
fix typo
Feb 11, 2025
aad0432
fix typo: pandas.LazyFrame -> polars.LazyFrame
Feb 11, 2025
13a0e14
fix test column suffixes
Feb 11, 2025
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fix typo: pandas.LazyFrame -> polars.LazyFrame
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zkeram committed Feb 11, 2025
commit aad0432275842aff40e424b7188cad66a959e620
2 changes: 1 addition & 1 deletion tests/test_bioframe.py
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Original file line number Diff line number Diff line change
Expand Up @@ -111,7 +111,7 @@ class TestBioframe:
BIO_PD_DF2,
cols1=("contig", "pos_start", "pos_end"),
cols2=("contig", "pos_start", "pos_end"),
output_type="pandas.LazyFrame",
output_type="polars.LazyFrame",
)

result_bio_coverage = bf.coverage(
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