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Update repic to 1.0.0 #50989

Merged
merged 1 commit into from
Sep 26, 2024
Merged

Update repic to 1.0.0 #50989

merged 1 commit into from
Sep 26, 2024

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@BiocondaBot BiocondaBot commented Sep 26, 2024

Update repic: 0.2.11.0.0

install with bioconda Conda

Info Link or Description
Recipe recipes/repic (click to view/edit other files)
Summary REPIC - an ensemble learning approach to cryo-EM particle picking.
Home https://github.com/ccameron/REPIC
Releases https://github.com/ccameron/REPIC/tags
Recipe Maintainer(s) @ccameron
Author @ccameron

This pull request was automatically generated (see docs).

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Sep 26, 2024
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coderabbitai bot commented Sep 26, 2024

📝 Walkthrough

Walkthrough

The pull request updates the meta.yaml file for the repic package. It involves changing the version number from "0.2.1" to "1.0.0", updating the source URL to reflect the new version, and modifying the SHA256 checksum for the source archive to ensure integrity.

Changes

File Change Summary
recipes/repic/meta.yaml - Version updated from "0.2.1" to "1.0.0"
- Source URL updated from v0.2.1.zip to v1.0.0.zip
- SHA256 checksum updated from fd77f660... to 27bc27ce...

Possibly related PRs

  • Update gbintk to 1.0.0 #50974: The gbintk package's version was updated from "0.1.0" to "1.0.0", involving similar changes to the meta.yaml file, including version number and SHA256 checksum updates.

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Actionable comments posted: 1

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 6ffd645 and 783b9f0.

📒 Files selected for processing (1)
  • recipes/repic/meta.yaml (1 hunks)
🧰 Additional context used
🪛 yamllint
recipes/repic/meta.yaml

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

🔇 Additional comments (3)
recipes/repic/meta.yaml (3)

1-1: Ignore yamllint error for Jinja2 syntax.

The yamllint tool reports a syntax error for the '%' character, but this is a false positive. The '%' is part of a Jinja2 template syntax, which is commonly used and valid in Conda recipes.

No action is required as this is expected behavior for Conda recipe files.

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


9-9: SHA256 checksum update approved.

The SHA256 checksum has been updated, which is consistent with the new version of the package.

To ensure the integrity and authenticity of the package, please verify:

  1. The new checksum matches the one provided by the package author.
  2. The checksum corresponds to the correct version (1.0.0) of the package.

Run the following script to download the package and verify the checksum:


Line range hint 1-67: Overall changes are consistent and approved.

The version update has been consistently applied throughout the file, including the package metadata and source URL. The SHA256 checksum has been updated accordingly.

As this is a major version update (0.2.1 to 1.0.0), please ensure:

  1. All necessary changes have been made, including potential updates to dependencies or build instructions.
  2. The package documentation (https://repic.readthedocs.io/en/latest/) has been updated to reflect any changes in the new version.
  3. The release notes for version 1.0.0 have been reviewed for any breaking changes or new features that might require additional updates to the recipe.

Run the following script to check if there are any significant changes in the package requirements between versions:

Review the output to ensure that any changes in package requirements are reflected in the meta.yaml file.

✅ Verification successful

Version update verified and approved.

The install_requires dependencies remain consistent between versions 0.2.1 and 1.0.0. No additional changes to dependencies are necessary.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Compare package requirements between versions

OLD_URL="https://raw.githubusercontent.com/ccameron/REPIC/v0.2.1/setup.py"
NEW_URL="https://raw.githubusercontent.com/ccameron/REPIC/v1.0.0/setup.py"

echo "Old version requirements:"
curl -s "$OLD_URL" | grep -A20 "install_requires"

echo -e "\nNew version requirements:"
curl -s "$NEW_URL" | grep -A20 "install_requires"

Length of output: 1502


Script:

#!/bin/bash
# Description: Extract install_requires from setup.py for versions 0.2.1 and 1.0.0 using ast-grep

OLD_URL="https://raw.githubusercontent.com/ccameron/REPIC/v0.2.1/setup.py"
NEW_URL="https://raw.githubusercontent.com/ccameron/REPIC/v1.0.0/setup.py"

echo "Old version install_requires:"
curl -s "$OLD_URL" | ast-grep --lang python --pattern 'install_requires = $_' --print '$_'

echo -e "\nNew version install_requires:"
curl -s "$NEW_URL" | ast-grep --lang python --pattern 'install_requires = $_' --print '$_'

Length of output: 981


Script:

#!/bin/bash
# Description: Extract install_requires from setup.py for versions 0.2.1 and 1.0.0 using rg

OLD_URL="https://raw.githubusercontent.com/ccameron/REPIC/v0.2.1/setup.py"
NEW_URL="https://raw.githubusercontent.com/ccameron/REPIC/v1.0.0/setup.py"

echo "Old version install_requires:"
curl -s "$OLD_URL" | rg -A20 "install_requires"

echo -e "\nNew version install_requires:"
curl -s "$NEW_URL" | rg -A20 "install_requires"

Length of output: 1322


Script:

#!/bin/bash
# Description: Extract REQUIRED dependencies from setup.py for versions 0.2.1 and 1.0.0 using rg

OLD_URL="https://raw.githubusercontent.com/ccameron/REPIC/v0.2.1/setup.py"
NEW_URL="https://raw.githubusercontent.com/ccameron/REPIC/v1.0.0/setup.py"

echo "Old version REQUIRED:"
curl -s "$OLD_URL" | rg "REQUIRED\s*=" -A10

echo -e "\nNew version REQUIRED:"
curl -s "$NEW_URL" | rg "REQUIRED\s*=" -A10

Length of output: 906

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

@@ -1,12 +1,12 @@
{% set version = "0.2.1" %}
{% set version = "1.0.0" %}
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💡 Codebase verification

Multiple references to version 0.2.1 found across the codebase.

Updating the version to 1.0.0 in recipes/repic/meta.yaml is a major change that may affect other parts of the project. Please address the following to ensure consistency and compatibility:

  • Update Dependencies: Review and update other meta.yaml files and configuration files that reference version 0.2.1 to align with the new version if necessary.
  • Check Compatibility: Ensure that dependent packages are compatible with version 1.0.0 and update their configurations accordingly.
  • Document Changes: Clearly document any breaking changes introduced in version 1.0.0 to assist developers in adapting to the new version.
🔗 Analysis chain

Version update to 1.0.0 approved.

The version has been correctly updated to 1.0.0 as per the PR objectives. This major version bump might indicate significant changes or breaking changes in the package.

To ensure compatibility, please verify:

  1. Any breaking changes are documented.
  2. Dependent packages are updated if necessary.

Run the following script to check for any mentions of the old version in other files:

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Check for mentions of the old version (0.2.1) in other files

rg --type yaml '0\.2\.1' --glob '!recipes/repic/meta.yaml'

Length of output: 1502


Script:

#!/bin/bash
# Description: Search for mentions of the old version (0.2.1) in all files excluding recipes/repic/meta.yaml

rg '0\.2\.1' --glob '!.git/*' --glob '!recipes/repic/meta.yaml'

Length of output: 10216

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

@BiocondaBot
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No artifacts found on the most recent builds. Either the builds failed, the artifacts have been removed due to age, or the recipe was blacklisted/skipped.

2 similar comments
@BiocondaBot
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No artifacts found on the most recent builds. Either the builds failed, the artifacts have been removed due to age, or the recipe was blacklisted/skipped.

@BiocondaBot
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No artifacts found on the most recent builds. Either the builds failed, the artifacts have been removed due to age, or the recipe was blacklisted/skipped.

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