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Update: r-deconstructsigs with fixes for hg38 #11431

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Oct 19, 2018
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Update: r-deconstructsigs with fixes for hg38 #11431

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2 changes: 1 addition & 1 deletion build-fail-blacklist
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Original file line number Diff line number Diff line change
Expand Up @@ -195,7 +195,7 @@ recipes/r-coloc
recipes/r-dartr
recipes/r-data.table
recipes/r-dbchip
recipes/r-deconstructsigs
#recipes/r-deconstructsigs
recipes/r-deoptimr
recipes/r-diptest
recipes/r-dpeak
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6 changes: 0 additions & 6 deletions recipes/r-deconstructsigs/build.sh
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Expand Up @@ -5,9 +5,3 @@ mv DESCRIPTION DESCRIPTION.old
grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION

$R CMD INSTALL --build .

# Add more build steps here, if they are necessary.

# See
# http://docs.continuum.io/conda/build.html
# for a list of environment variables that are set during the build process.
19 changes: 10 additions & 9 deletions recipes/r-deconstructsigs/meta.yaml
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@@ -1,34 +1,35 @@
{% set version = '1.8.0' %}
{% set version = '1.8.0.1' %}

package:
name: r-deconstructsigs
version: {{ version|replace("-", "_") }}

source:
url:
- https://cran.r-project.org/src/contrib/deconstructSigs_{{ version }}.tar.gz
- https://cran.r-project.org/src/contrib/Archive/deconstructSigs/deconstructSigs_{{ version }}.tar.gz
sha256: 2ab8f6c0fd674bd270035ba2112f1a79d63de1155ba9698c4169c92196059d04
# Last release version is missing fixes for hg38, pull from GitHub
# https://github.com/raerose01/deconstructSigs/issues/27
url: https://github.com/raerose01/deconstructSigs/archive/ca3c2f9.tar.gz
# - https://cran.r-project.org/src/contrib/deconstructSigs_{{ version }}.tar.gz
# - https://cran.r-project.org/src/contrib/Archive/deconstructSigs/deconstructSigs_{{ version }}.tar.gz
sha256: 0e31aed3e4428e0026b33e663deee71d9bba81db56a1306e0a81666aa4a0e39d

build:
number: 1
number: 0
rpaths:
- lib/R/lib/
- lib/

requirements:
host:
- r-base
- bioconductor-bsgenome
- bioconductor-bsgenome.hsapiens.ucsc.hg19
- bioconductor-genomeinfodb
- r-base
- r-reshape2

run:
- r-base
- bioconductor-bsgenome
- bioconductor-bsgenome.hsapiens.ucsc.hg19
- bioconductor-genomeinfodb
- r-base
- r-reshape2

test:
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