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VEP: bump major version #11201

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merged 3 commits into from
Oct 3, 2018
Merged

VEP: bump major version #11201

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643e8a8
VEP: bump major version
matthdsm Oct 3, 2018
ae1fb24
VEP: bumped plugin major version
matthdsm Oct 3, 2018
ae73fb6
VEP: update plugin install
matthdsm Oct 3, 2018
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17 changes: 9 additions & 8 deletions recipes/ensembl-vep/build.sh
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
#!/bin/bash
export C_INCLUDE_PATH=$PREFIX/include
target=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
version=93
version=94
mkdir -p $target
mkdir -p $PREFIX/bin

Expand Down Expand Up @@ -36,13 +36,14 @@ vep_install -a a --NO_HTSLIB --NO_TEST --NO_BIOPERL --NO_UPDATE
rm -rf t/

# Install plugins
curl -ks -o CADD.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/CADD.pm
curl -ks -o dbNSFP.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/dbNSFP.pm
curl -ks -o MaxEntScan.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/MaxEntScan.pm
curl -ks -o SpliceRegion.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/SpliceRegion.pm
curl -ks -o GeneSplicer.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/GeneSplicer.pm
curl -ks -o dbscSNV.pm https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/$version/dbscSNV.pm
curl -L -ks -o loftee.tar.gz https://github.com/konradjk/loftee/archive/f6789b9.tar.gz
curl -L -ks -o VEP_plugins.tar.gz https://github.com/Ensembl/VEP_plugins/archive/release/$version.tar.gz
tar -xzvpf VEP_plugins.tar.gz
mv VEP_plugins*/*.pm .
mv VEP_plugins*/config .
rm -rf VEP_plugins*

# Install loftee
curl -L -ks -o loftee.tar.gz https://github.com/konradjk/loftee/archive/df3d29e.tar.gz
tar -xzvpf loftee.tar.gz
mv loftee-*/*.pl .
mv loftee-*/*.pm .
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4 changes: 2 additions & 2 deletions recipes/ensembl-vep/meta.yaml
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Original file line number Diff line number Diff line change
@@ -1,12 +1,12 @@
{% set version="93.4" %}
{% set version="94.0" %}

package:
name: ensembl-vep
version: {{ version }}

source:
url: https://github.com/Ensembl/ensembl-vep/archive/release/{{ version }}.tar.gz
sha256: a760567264f1e7df50639cc8e6f736d9509531c2bf281877a9d28dd6410d4507
sha256: 194a3b6bd963758513c68fea019f937c6ee3572e4d36309905a930d60673e425

build:
number: 0
Expand Down