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{% set name = "sopa" %} | ||
{% set version = "1.1.5" %} | ||
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package: | ||
name: {{ name|lower }} | ||
version: {{ version }} | ||
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source: | ||
url: https://pypi.org/packages/source/{{ name[0] }}/{{ name }}/sopa-{{ version }}.tar.gz | ||
sha256: f2b7265b5d231bdcca49185e8b2015fea34ea53404336165befb920fb3427fc6 | ||
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build: | ||
entry_points: | ||
- sopa = sopa.main:app | ||
noarch: python | ||
script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation | ||
number: 0 | ||
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requirements: | ||
host: | ||
- python >=3.9,<3.12 | ||
- poetry-core >=1.0.0 | ||
- pip | ||
run: | ||
- python >=3.9,<3.12 | ||
- spatialdata >=0.2.0 | ||
- spatialdata-io >=0.1.3 | ||
- scanpy >=1.9.8 | ||
- botocore 1.34.19 | ||
- typer >=0.9.0 | ||
- setuptools >=69.2.0 | ||
- flake8 <8.0.0,>=7.0.0 | ||
run_constrained: | ||
- cellpose >=3.0.5 | ||
- opencv >=4.8.0.76 | ||
- pytorch >=2.0.0,!=2.0.1,!=2.1.0 | ||
- toml >=0.10.2 | ||
- loompy >=3.0.7 | ||
- tangram-sc >=1.0.4 | ||
- snakemake >=7.32.4,<8.0.0,<8.1.3 | ||
- pulp >=2.3.1,<3.0.0,<2.8 | ||
- tiffslide >=2.3.1,<3.0.0 | ||
- black >=22.8.0,<23.0.0 | ||
- isort >=5.10.1,<6.0.0 | ||
- pytest >=7.1.3,<8.0.0 | ||
- ipykernel >=6.25.2,<7.0.0 | ||
- mkdocs-material >=9.3.2,<10.0.0 | ||
- mkdocs-jupyter >=0.24.6,<0.25.0 | ||
- mkdocstrings >=0.23.0,<0.24.0 | ||
- mkdocstrings-python >=1.7.3,<2.0.0 | ||
- flake8 >=7.0.0,<8.0.0 | ||
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test: | ||
imports: | ||
- sopa | ||
commands: | ||
- pip check | ||
- sopa --help | ||
requires: | ||
- pip | ||
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about: | ||
home: https://gustaveroussy.github.io/sopa | ||
summary: Spatial-omics pipeline and analysis | ||
license: BSD-3-Clause | ||
license_file: LICENSE | ||
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extra: | ||
recipe-maintainers: | ||
- quentinblampey |