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adding sopa meta.yaml file (#51367)
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quentinblampey authored Oct 14, 2024
1 parent aaef81b commit fe9fa8e
Showing 1 changed file with 70 additions and 0 deletions.
70 changes: 70 additions & 0 deletions sopa/meta.yaml
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{% set name = "sopa" %}
{% set version = "1.1.5" %}

package:
name: {{ name|lower }}
version: {{ version }}

source:
url: https://pypi.org/packages/source/{{ name[0] }}/{{ name }}/sopa-{{ version }}.tar.gz
sha256: f2b7265b5d231bdcca49185e8b2015fea34ea53404336165befb920fb3427fc6

build:
entry_points:
- sopa = sopa.main:app
noarch: python
script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
number: 0

requirements:
host:
- python >=3.9,<3.12
- poetry-core >=1.0.0
- pip
run:
- python >=3.9,<3.12
- spatialdata >=0.2.0
- spatialdata-io >=0.1.3
- scanpy >=1.9.8
- botocore 1.34.19
- typer >=0.9.0
- setuptools >=69.2.0
- flake8 <8.0.0,>=7.0.0
run_constrained:
- cellpose >=3.0.5
- opencv >=4.8.0.76
- pytorch >=2.0.0,!=2.0.1,!=2.1.0
- toml >=0.10.2
- loompy >=3.0.7
- tangram-sc >=1.0.4
- snakemake >=7.32.4,<8.0.0,<8.1.3
- pulp >=2.3.1,<3.0.0,<2.8
- tiffslide >=2.3.1,<3.0.0
- black >=22.8.0,<23.0.0
- isort >=5.10.1,<6.0.0
- pytest >=7.1.3,<8.0.0
- ipykernel >=6.25.2,<7.0.0
- mkdocs-material >=9.3.2,<10.0.0
- mkdocs-jupyter >=0.24.6,<0.25.0
- mkdocstrings >=0.23.0,<0.24.0
- mkdocstrings-python >=1.7.3,<2.0.0
- flake8 >=7.0.0,<8.0.0

test:
imports:
- sopa
commands:
- pip check
- sopa --help
requires:
- pip

about:
home: https://gustaveroussy.github.io/sopa
summary: Spatial-omics pipeline and analysis
license: BSD-3-Clause
license_file: LICENSE

extra:
recipe-maintainers:
- quentinblampey

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