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[ci skip] Merge PR 21851
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Merge PR #21851, commits were: 
 * Merge remote-tracking branch 'upstream/master'
 * Merge branch 'master' of github.com:bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge remote-tracking branch 'upstream/master'
 * Merge remote-tracking branch 'upstream/master'
 * Merge remote-tracking branch 'upstream/master'
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge remote-tracking branch 'upstream/master'
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge branch 'master' of https://github.com/phac-nml/bioconda-recipes
 * Merge remote-tracking branch 'upstream/master'
 * Merge remote-tracking branch 'upstream/master'
 * Merge pull request #4 from phac-nml/update-rgi

Update rgi
 * Revert "line fix in bootstrap.py"

This reverts commit 5ac1ecd.
 * move build script into meta.yaml
 * add preprocessing selector to skip python 2.7
 * change python & matplotlib versions; add build.sh file
 * line fix in bootstrap.py
 * remove older recipes
 * move build script into meta
 * fix build
 * update meta and build
 * testing circleci
 * change build number
 * change source to github
 * update dependencies list
 * first commit
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DarianHole authored May 1, 2020
1 parent 9e11807 commit e2b5547
Showing 1 changed file with 44 additions and 0 deletions.
44 changes: 44 additions & 0 deletions recipes/pangolin/meta.yaml
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{% set version = "1.1" %}

package:
name: pangolin
version: {{ version }}

source:
- url: https://github.com/hCoV-2019/pangolin/archive/v{{ version }}.tar.gz
sha256: cdd88a06d74be86d90c7775bcbf1aa837c505ad750200979b4e47c27e9f7e70e
folder: pangolin
- url: https://github.com/hCoV-2019/lineages/archive/2020-04-27.tar.gz
sha256: 0a998177c5395386e4d18a215c37db7a9af03d55f110ed319c94810ff7f86522
folder: lineages


build:
number: 0
noarch: python
script: {{ PYTHON }} -m pip install ./pangolin/. --no-deps -vv && {{ PYTHON }} -m pip install ./lineages/. --no-deps -vv

requirements:
host:
- python
- pip
run:
- python >=3.6
- pip
- biopython
- iqtree =1.6.12
- mafft
- snakemake-minimal
- pytools
- dendropy >=4.4.0

test:
commands:
- pangolin -h
- pangolin -lv

about:
home: https://github.com/hCoV-2019/pangolin
license: GPL-3.0
license_file: pangolin/LICENSE.txt
summary: Phylogenetic Assignment of Named Global Outbreak LINeages

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