-
Notifications
You must be signed in to change notification settings - Fork 3.3k
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
add bioconductor-chromvar recipe (#11718)
* add bioconductor-chromvar recipe
- Loading branch information
1 parent
88ada46
commit c6c9ef9
Showing
2 changed files
with
80 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,4 @@ | ||
| #!/bin/bash | ||
| mv DESCRIPTION DESCRIPTION.old | ||
| grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION | ||
| $R CMD INSTALL --build . |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,76 @@ | ||
| {% set version = "1.2.0" %} | ||
| {% set name = "chromVAR" %} | ||
| {% set bioc = "3.7" %} | ||
|
|
||
| package: | ||
| name: 'bioconductor-{{ name|lower }}' | ||
| version: '{{ version }}' | ||
| source: | ||
| url: | ||
| - 'http://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' | ||
| - 'https://depot.galaxyproject.org/software/{{ name }}/{{ name }}_{{ version }}_src_all.tar.gz' | ||
| sha256: 484a08055f35c6c9fbe7963e3e265058664dae8328afd55ccd432912872a627c | ||
| build: | ||
| number: 0 | ||
| rpaths: | ||
| - lib/R/lib/ | ||
| - lib/ | ||
| requirements: | ||
| host: | ||
| - bioconductor-iranges | ||
| - bioconductor-genomicranges | ||
| - bioconductor-genomeinfodb | ||
| - bioconductor-biocparallel | ||
| - bioconductor-biocgenerics | ||
| - bioconductor-biostrings | ||
| - bioconductor-tfbstools | ||
| - bioconductor-rsamtools | ||
| - bioconductor-s4vectors | ||
| - bioconductor-summarizedexperiment | ||
| - bioconductor-bsgenome | ||
| - r-essentials | ||
| - r-base | ||
| - r-ggplot2 | ||
| - r-rcpp | ||
| - r-rcpparmadillo | ||
| - r-rtsne | ||
| - r-plotly | ||
| - r-shiny | ||
| - r-miniui | ||
| - r-dt | ||
| - r-nabor | ||
| run: | ||
| - bioconductor-iranges | ||
| - bioconductor-genomicranges | ||
| - bioconductor-genomeinfodb | ||
| - bioconductor-biocparallel | ||
| - bioconductor-biocgenerics | ||
| - bioconductor-biostrings | ||
| - bioconductor-tfbstools | ||
| - bioconductor-rsamtools | ||
| - bioconductor-s4vectors | ||
| - bioconductor-summarizedexperiment | ||
| - bioconductor-bsgenome | ||
| - r-essentials | ||
| - r-base | ||
| - r-ggplot2 | ||
| - r-rcpp | ||
| - r-rcpparmadillo | ||
| - r-rtsne | ||
| - r-plotly | ||
| - r-shiny | ||
| - r-miniui | ||
| - r-dt | ||
| - r-nabor | ||
|
|
||
| test: | ||
| commands: | ||
| - '$R -e "library(''{{ name }}'')"' | ||
| about: | ||
| home: 'http://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' | ||
| license: GPL-2 | ||
| summary: 'Determine variation in chromatin accessibility across sets of annotations or peaks. Designed primarily for single-cell or sparse chromatin accessibility data, e.g. from scATAC-seq or sparse bulk ATAC or DNAse-seq experiments.' | ||
|
|
||
| extra: | ||
| identifiers: | ||
| - biotools:chromvar |