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add bioconductor-chromvar recipe (#11718)
* add bioconductor-chromvar recipe
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#!/bin/bash | ||
mv DESCRIPTION DESCRIPTION.old | ||
grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION | ||
$R CMD INSTALL --build . |
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{% set version = "1.2.0" %} | ||
{% set name = "chromVAR" %} | ||
{% set bioc = "3.7" %} | ||
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package: | ||
name: 'bioconductor-{{ name|lower }}' | ||
version: '{{ version }}' | ||
source: | ||
url: | ||
- 'http://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' | ||
- 'https://depot.galaxyproject.org/software/{{ name }}/{{ name }}_{{ version }}_src_all.tar.gz' | ||
sha256: 484a08055f35c6c9fbe7963e3e265058664dae8328afd55ccd432912872a627c | ||
build: | ||
number: 0 | ||
rpaths: | ||
- lib/R/lib/ | ||
- lib/ | ||
requirements: | ||
host: | ||
- bioconductor-iranges | ||
- bioconductor-genomicranges | ||
- bioconductor-genomeinfodb | ||
- bioconductor-biocparallel | ||
- bioconductor-biocgenerics | ||
- bioconductor-biostrings | ||
- bioconductor-tfbstools | ||
- bioconductor-rsamtools | ||
- bioconductor-s4vectors | ||
- bioconductor-summarizedexperiment | ||
- bioconductor-bsgenome | ||
- r-essentials | ||
- r-base | ||
- r-ggplot2 | ||
- r-rcpp | ||
- r-rcpparmadillo | ||
- r-rtsne | ||
- r-plotly | ||
- r-shiny | ||
- r-miniui | ||
- r-dt | ||
- r-nabor | ||
run: | ||
- bioconductor-iranges | ||
- bioconductor-genomicranges | ||
- bioconductor-genomeinfodb | ||
- bioconductor-biocparallel | ||
- bioconductor-biocgenerics | ||
- bioconductor-biostrings | ||
- bioconductor-tfbstools | ||
- bioconductor-rsamtools | ||
- bioconductor-s4vectors | ||
- bioconductor-summarizedexperiment | ||
- bioconductor-bsgenome | ||
- r-essentials | ||
- r-base | ||
- r-ggplot2 | ||
- r-rcpp | ||
- r-rcpparmadillo | ||
- r-rtsne | ||
- r-plotly | ||
- r-shiny | ||
- r-miniui | ||
- r-dt | ||
- r-nabor | ||
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test: | ||
commands: | ||
- '$R -e "library(''{{ name }}'')"' | ||
about: | ||
home: 'http://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' | ||
license: GPL-2 | ||
summary: 'Determine variation in chromatin accessibility across sets of annotations or peaks. Designed primarily for single-cell or sparse chromatin accessibility data, e.g. from scATAC-seq or sparse bulk ATAC or DNAse-seq experiments.' | ||
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extra: | ||
identifiers: | ||
- biotools:chromvar |