add run_exports

recipes/svdss/build.sh

@@ -1,10 +1,19 @@
-#!/usr/bin/env bash
-
-mkdir -p build
-cd build
-cmake -DCMAKE_BUILD_TYPE=Release -DCONDAPREFIX=${PREFIX} ..
-make
-cd ..
+#!/bin/bash
 
 mkdir -p ${PREFIX}/bin
-cp SVDSS ${PREFIX}/bin
+
+if [[ `uname` == "Darwin" ]]; then
+	export CONFIG_ARGS="-DCMAKE_FIND_FRAMEWORK=NEVER -DCMAKE_FIND_APPBUNDLE=NEVER"
+else
+	export CONFIG_ARGS=""
+fi
+
+cmake -S. -B build -DCMAKE_BUILD_TYPE=Release \
+	-DCONDAPREFIX="${PREFIX}" -DCMAKE_CXX_COMPILER="${CXX}" \
+	-DCMAKE_CXX_FLAGS="${CXXFLAGS} -O3 -I${PREFIX}/include" \
+	"${CONFIG_ARGS}"
+cmake --build build -j "${CPU_COUNT}" -v
+
+cd build
+chmod 0755 SVDSS
+cp -f SVDSS ${PREFIX}/bin

recipes/svdss/meta.yaml

@@ -11,7 +11,9 @@ source:
 
 build:
   number: 0
-  skip: True  # [osx]
+  #skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage('svdss', max_pin="x") }}
 
 requirements:
   build:
@@ -20,16 +22,20 @@ requirements:
     - make
     - automake
     - autoconf
-    - coreutils
-    - cmake >=3.14
+    - libtool
+    - cmake
     - git
   host:
+    - libgomp  # [linux]
+    - llvm-openmp  # [osx]
     - htslib
     - gsl
     - zlib
     - bzip2
     - xz
   run:
+    - libgomp  # [linux]
+    - llvm-openmp  # [osx]
     - samtools >=1.9
     - bcftools >=1.9
 
@@ -38,12 +44,17 @@ test:
     - SVDSS --version
 
 about:
-  home: https://github.com/Parsoa/SVDSS
+  home: "https://github.com/Parsoa/SVDSS"
   license: MIT
-  summary: Structural Variant Discovery from Sample-specific Strings
+  license_family: MIT
+  license_file: LICENSE
+  summary: "Structural Variant Discovery from Sample-specific Strings."
+  dev_url: "https://github.com/Parsoa/SVDSS"
+  doc_url: "https://github.com/Parsoa/SVDSS/blob/v{{ version }}/README.md"
 
 extra:
   identifiers:
     - biotools:svdss
+    - doi:10.1038/s41592-022-01674-1
   recipe-maintainers:
     - ldenti