-
Notifications
You must be signed in to change notification settings - Fork 3.3k
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
24 changed files
with
160 additions
and
67 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,18 @@ | ||
#!/bin/bash | ||
|
||
set -xe | ||
|
||
export CPATH=$PREFIX/include:$CPATH | ||
export LIBRARY_PATH=$PREFIX/lib:$LIBRARY_PATH | ||
export LD_LIBRARY_PATH=$PREFIX/lib:$LD_LIBRARY_PATH | ||
|
||
mkdir build | ||
cd build | ||
cmake -DCMAKE_INSTALL_PREFIX=$PREFIX \ | ||
-DCMAKE_PREFIX_PATH=$PREFIX \ | ||
-DCMAKE_INCLUDE_PATH=$PREFIX/include \ | ||
-DCMAKE_LIBRARY_PATH=$PREFIX/lib \ | ||
-DZLIB_ROOT=$PREFIX \ | ||
.. | ||
make -j ${CPU_COUNT} VERBOSE=1 | ||
make install |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,5 @@ | ||
c_compiler_version: | ||
- 9.3.0 # [linux] | ||
|
||
cxx_compiler_version: | ||
- 9.3.0 # [linux] |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,54 @@ | ||
{% set name = "moni" %} | ||
{% set version = "0.2.2" %} | ||
|
||
package: | ||
name: {{ name|lower }} | ||
version: {{ version }} | ||
|
||
source: | ||
url: https://github.com/maxrossi91/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz | ||
sha256: 638cd590e0c91218a9c7c0bf5aac6289d445a5a1b3ad91aa0cf62d7ff57ce0ce | ||
|
||
build: | ||
skip: True # [osx] | ||
number: 0 | ||
run_exports: | ||
- {{ pin_subpackage(name, max_pin='x.x') }} | ||
|
||
requirements: | ||
build: | ||
- {{ compiler('cxx') }} | ||
- cmake | ||
- make | ||
- git | ||
host: | ||
- zlib | ||
- python | ||
run: | ||
- zlib | ||
- python | ||
|
||
test: | ||
commands: | ||
- moni -h | ||
- moni build -h | ||
- moni ms -h | ||
- moni mems -h | ||
- moni extend -h | ||
|
||
about: | ||
home: https://github.com/maxrossi91/moni | ||
license: MIT | ||
license_family: MIT | ||
license_file: LICENSE | ||
summary: 'A Pangenomics Index for Finding MEMs' | ||
description: | | ||
MONI (Multi) is a Pangenomics Index for Finding Maximal Exact Matches (MEMs). | ||
It uses the prefix-free parsing of the text to build the Burrows-Wheeler Transform (BWT) | ||
of the reference genomes, the suffix array (SA) samples at the beginning and at the end | ||
of each run of the BWT, and the threshold positions. | ||
extra: | ||
recipe-maintainers: | ||
- AndreaGuarracino | ||
- maxrossi91 |
Oops, something went wrong.