Refactoring and cleanup, remove unnecessary code and reduce duplication#27

Open

hejung wants to merge 11 commits intobio-phys:mainfrom

hejung:distributed_housekeeping

Commits on Nov 22, 2025

renamed 'CommittorEngineSpec' to 'MDEngineSpec' and moved it to a more central file to facilitate reuse in shooting PathMovers
hejung
committed
Add MDEngineSpec dataclass
hejung
committed
update docs to reflect rename of CommittorEngineSpec to MDEngineSpec
hejung
committed

Commits on Nov 24, 2025

Commits on Dec 9, 2025

aimmd.distributed: slightly improve tqdm progress bars
hejung
committed

Commits on Dec 23, 2025

Move density adaption to the shooting point selector (for aimmd.distributed), improve aimmd.distributed.pathmovers class inheritance
hejung
committed