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Remove separate vector database#720

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mzur merged 2 commits intomasterfrom
merge-pgvector
Dec 13, 2023
Merged

Remove separate vector database#720
mzur merged 2 commits intomasterfrom
merge-pgvector

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@mzur
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@mzur mzur commented Dec 12, 2023

The default database is now used as vector database, too.

This partially undos #670.

References biigle/maia#150

  • Write a migration guide for the vector database (see here)
  • Test the migration guide
  • Update the biigle.de backup scripts https://github.com/biigle/biigle.de/pull/102
  • Update the biigle.de database host setup instructions as well as the backup/restore instructions

The default database is now used as vector database, too.

References biigle/maia#150
@mzur
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mzur commented Dec 12, 2023

Migration guide:

  1. After step 4.1 of the updating instructions, do a vector database dump with the command:
     docker exec -i $(docker compose ps -q vector_database) \
         pg_dump --insert --on-conflict-do-nothing --data-only -U biigle -d biigle > biigle_vector_db.sql
    
  2. After step 6.1, run:
    cat biigle_vector_db.sql | docker exec -i $(docker compose ps -q database) \
         psql -U biigle biigle -
    
  3. Delete the vector_database Docker container and volume

@mzur mzur merged commit 9e18403 into master Dec 13, 2023
@mzur mzur deleted the merge-pgvector branch December 13, 2023 10:43
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