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bigbio · Jul 14, 2024 · a5e3a61 · a5e3a61
1 parent 92542d1
commit a5e3a61
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/sdrf_pipelines/ols/ols.py b/sdrf_pipelines/ols/ols.py
@@ -227,11 +227,11 @@ def build_ontology_index(ontology_file: str, output_file: str = None, ontology_n
         logger.info("Building index of %s", ontology_file)
 
         if owl_file:
-            terms = read_owl_file(ontology_file, ontology_name = ontology_name)
+            terms = read_owl_file(ontology_file, ontology_name=ontology_name)
             terms = [term for term in terms if "label" in term]
             df = pd.DataFrame(terms)
         else:
-            terms = read_obo_file(ontology_file, ontology_name = ontology_name)
+            terms = read_obo_file(ontology_file, ontology_name=ontology_name)
             # remove terms with no label
             terms = [term for term in terms if "label" in term]
             df = pd.DataFrame(terms)