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Minor changes#637

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ypriverol merged 2 commits into
bigbio:devfrom
ypriverol:dev
Jan 8, 2026
Merged

Minor changes#637
ypriverol merged 2 commits into
bigbio:devfrom
ypriverol:dev

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@ypriverol

@ypriverol ypriverol commented Jan 8, 2026

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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the bigbio/quantms branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

PR Type

Documentation


Description

  • Update CHANGELOG.md with location and module details

  • Change release location from Guangzhou to Caracas

  • Clarify thermorawfileparser module migration scope


Diagram Walkthrough

flowchart LR
  A["CHANGELOG.md"] -- "Update location and module details" --> B["Release v1.7.0 documentation"]
Loading

File Walkthrough

Relevant files
Documentation
CHANGELOG.md
Update changelog location and module migration details     

CHANGELOG.md

+2/-2     

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@ypriverol ypriverol merged commit b74fb9b into bigbio:dev Jan 8, 2026
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PR Compliance Guide 🔍

Below is a summary of compliance checks for this PR:

Security Compliance
🟢
No security concerns identified No security vulnerabilities detected by AI analysis. Human verification advised for critical code.
Ticket Compliance
🎫 No ticket provided
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Codebase Duplication Compliance
Codebase context is not defined

Follow the guide to enable codebase context checks.

Custom Compliance
🟢
Generic: Comprehensive Audit Trails

Objective: To create a detailed and reliable record of critical system actions for security analysis
and compliance.

Status: Passed

Learn more about managing compliance generic rules or creating your own custom rules

Generic: Meaningful Naming and Self-Documenting Code

Objective: Ensure all identifiers clearly express their purpose and intent, making code
self-documenting

Status: Passed

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Generic: Robust Error Handling and Edge Case Management

Objective: Ensure comprehensive error handling that provides meaningful context and graceful
degradation

Status: Passed

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Generic: Secure Error Handling

Objective: To prevent the leakage of sensitive system information through error messages while
providing sufficient detail for internal debugging.

Status: Passed

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Generic: Secure Logging Practices

Objective: To ensure logs are useful for debugging and auditing without exposing sensitive
information like PII, PHI, or cardholder data.

Status: Passed

Learn more about managing compliance generic rules or creating your own custom rules

Generic: Security-First Input Validation and Data Handling

Objective: Ensure all data inputs are validated, sanitized, and handled securely to prevent
vulnerabilities

Status: Passed

Learn more about managing compliance generic rules or creating your own custom rules

Compliance status legend 🟢 - Fully Compliant
🟡 - Partial Compliant
🔴 - Not Compliant
⚪ - Requires Further Human Verification
🏷️ - Compliance label

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