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BIBBOX

Welcome to the BIBBOX Repository

The BIBBOX allows researchers to publish their data and the associated data management software (Apps) in a FAIR manner, through the incorporation of a FAIR Data Point into the Apps. The architecture of the BIBBOX is modular and flexible, allowing researchers to add a FAIR Data Point to existing open-source software solutions and to publish these in the App Store. The main components of the BIBBOX architecture (Frontend/Backend) are stored on the sys-bibbox repository.

How to contribute to the BIBBOX?

You can create a BIBBOX App!

If you have an open-source software solution, you can easily transform it into a BIBBOX App, following the tutorial at http://bibbox.bbmri-eric.eu/create-a-bibbox-app/.

How to create a BIBBOX App?

Each BIBBOX App must be published in a repository named app-nameofapp. The repository app-template aims to guide you when creating an App.

The most important steps to generate a BIBBOX App are:

The Base Docker is a container created from a Docker Image of the existing software tool. The officially published Docker Image of the software can be used. If none is available, a Dockerfile of the Docker Image should be stored in a BIBBOX GitHub repository named img-nameofdocker and the Docker Image published in the BIBBOX Docker Hub. If necessary, additional Docker Containers of the App, such as databases, can be integrated with the Docker Image of the Base Docker.

In order to register an App in the BIBBOX, the files applications.json and bibbox.json of the application-store repository have to be extended.

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  1. application-store application-store Public

    Shell 6 1

  2. app-openspecimen app-openspecimen Public

    BIBBOX openspecimen application

    Shell 8 4

  3. sys-bibbox sys-bibbox Public

    Sys repository of the new bibbox

    TypeScript 1 3

  4. bibbox-documentation bibbox-documentation Public

    Documentation of the BIBBOX framework

    HTML 2

Repositories

Showing 10 of 127 repositories
  • dev-sas-reporting Public

    Reporting tool for the BBMRI-ERIC Self Assessment Service (SAS)

    bibbox/dev-sas-reporting’s past year of commit activity
    Java 0 0 0 5 Updated Oct 3, 2024
  • bibbox/application-store’s past year of commit activity
    Shell 6 1 1 0 Updated Oct 3, 2024
  • bibbox/app-molgenis-emx2’s past year of commit activity
    0 1 0 1 Updated Oct 3, 2024
  • sys-bibbox Public

    Sys repository of the new bibbox

    bibbox/sys-bibbox’s past year of commit activity
    TypeScript 1 MIT 3 6 0 Updated Sep 30, 2024
  • openspecimen Public Forked from krishagni/openspecimen

    OpenSpecimen is an open source biobanking/biorepository management software developed by Krishagni Solutions (India).

    bibbox/openspecimen’s past year of commit activity
    Java 0 BSD-3-Clause 56 0 2 Updated Aug 20, 2024
  • bibbox-documentation Public

    Documentation of the BIBBOX framework

    bibbox/bibbox-documentation’s past year of commit activity
    HTML 0 2 1 1 Updated Jun 7, 2024
  • img-openspecimen Public

    Image repository for openspecimen app

    bibbox/img-openspecimen’s past year of commit activity
    Shell 2 2 0 2 Updated May 10, 2024
  • app-openspecimen Public

    BIBBOX openspecimen application

    bibbox/app-openspecimen’s past year of commit activity
    Shell 8 4 2 1 Updated Apr 11, 2024
  • bibbox/res-images’s past year of commit activity
    0 0 0 0 Updated Mar 19, 2024
  • fdpAPIconnector.py Public

    Python package for communictaion with a fdp's API

    bibbox/fdpAPIconnector.py’s past year of commit activity
    Python 2 BSD-2-Clause 1 0 0 Updated Mar 15, 2024