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Bug: Allelic inbalance in NanoSim with very divergent haplotype sizes

Status: Open.

#31 In berntpopp/MucOneUp;

· berntpopp opened on Apr 8, 2025

chore: deterministic simulation - seed in read simulators

Status: Open.

#30 In berntpopp/MucOneUp;

· berntpopp opened on Apr 8, 2025

feat: allow simulating multiple read types in the same run

Status: Open.

#29 In berntpopp/MucOneUp;

· berntpopp opened on Apr 8, 2025

chore: human refernce for different assemblies

enhancementNew feature or requestNew feature or request

Status: Open.

#28 In berntpopp/MucOneUp;

· berntpopp opened on Apr 8, 2025

refactor(cli): simplify complex control flow in main

enhancementNew feature or requestNew feature or request

Status: Open.

#26 In berntpopp/MucOneUp;

· berntpopp opened on Apr 8, 2025

refactor(cli): break down monolithic main function

enhancementNew feature or requestNew feature or request

Status: Open.

#25 In berntpopp/MucOneUp;

· berntpopp opened on Apr 8, 2025

feat: make a web tool to generate the repeats online

enhancementNew feature or requestNew feature or request

wontfixThis will not be worked onThis will not be worked on

Status: Open.

#19 In berntpopp/MucOneUp;

· berntpopp opened on Feb 18, 2025

feat: make a dockerized version

enhancementNew feature or requestNew feature or request

Status: Open.

#18 In berntpopp/MucOneUp;

· berntpopp opened on Feb 18, 2025

Feat: make this into a pip package

enhancementNew feature or requestNew feature or request

Status: Open.

#17 In berntpopp/MucOneUp;

· berntpopp opened on Feb 18, 2025

Feat: In Silico SNaPshot Assay Validation for MUC1 <code>dupC</code> Mutation

enhancementNew feature or requestNew feature or request

Status: Open.

#15 In berntpopp/MucOneUp;

· berntpopp opened on Feb 4, 2025

feat: integrate PacBio and Oxford Nanopore read simulation

enhancementNew feature or requestNew feature or request

Status: Open.

#1 In berntpopp/MucOneUp;

· berntpopp opened on Feb 1, 2025