Release v3.0.0 (translationalneuromodeling#26)

* Added a function to get the tapas revision and print it at start.

* Update README.md; GitHub Links, new support policy, links to toolboxes and updated list of their names

* updated print logo to translational not TNU; typo versions

* Update README.md; links to changelog; extra info on toolboxes; new version 2.7.3.2.

* Update CHANGELOG.md

* Update README.md;removed GPO from the list of available toolboxes

* Deleted PhysIO folder for reinsertion with commit history

* Added PhysIO via subtree merge

* Update README.md; release number 2.7.4.1 for integrating PhysIO R2017.3

* Update CHANGELOG.md; release number 2.7.4.1 for integrating PhysIO R2017.3

* added TAPAS logos to misc

* Update README.md; included logo and download info via releases

* Changed version.

* - HUGE toolbox: initial release

* - Added windows mex to gitignore

* - HUGE: updated readme file

* - added matlab autosave (*.asv) to gitignore

* - HUGE: rename readme files

* - HUGE: added prior generating function, renamed readme files, reorganized default parameter script

* - HUGE: moved default settings to inversion function

* - HUGE: improved reproducibility, added more comments

* Update CHANGELOG.md; CLA/CONTRIBUTING.md mentioned

* Update CHANGELOG.md; prospective date of release added

* added Contributing and CLA from tapas-meeting.wiki

* updated CLA file name

* - HUGE: added simplified interface; published demo script as html; added example for empirical Bayes; added function for generating example data; added function for basic visualization of results

* Implemented automatic download of the data. Not tested.

* Updated the readme file.

* Small error in documentation.

* Removed empty gpo folder from TAPAS

* rDCM Toolbox: Initial release

* Enabled the automatic compiling of mex files and added a new function for visualization of rDCM results

* Adapted the ReadMe.md file to acknowledge the use of SPM functions

* - HUGE: fixed bug when compiling from different directory; fixed bug when calling inversion function without optional parameters; updated readme file

* Updated changelog.

* Removed the mex-files, will be generated for each user automatically from the script

* Small modification to visualization and added a Manual

* Update README.md

* Polished the option and output structure; also adopted the Manual.pdf to account for these changes

* Additional polishing of code and Manual

* Changed the Header of all scripts and did some slight restructuring of tapas_rdcm_estimate

* - HUGE: added RNG seed as optional input; fixed typo

* Implement suggestions by YY for improvement of rDCM

* Small change to visualization function

* Adjusted the headers of the functions

* - HUGE: added suggestion for changelog entry for HUGE

* Corrected fileseparator in tapas_rdcm_tutorial.m

* Checkouted the latest version of dora from Eduardo's fork.

* Updated CHANGELOG.md

* Revert "Merge branch 'develop'"

This reverts commit 2d944ed, reversing
changes made to 72ff6f5.

* - HUGE: removed dependency on Matlab statistics toolbox

* Adapted the style of Changelog to style in TAPAS

* Added rDCM entry to CHANGELOG

* Made restrictInputs an explicit option to set

* Recovered deleted files.

* Improved visualization function

* Merge development into rDCM branch

* Added rDCM to the CHANGELOG of TAPAS

* HGF Toolbox version 5.2.0

* Updated changelog.

* Refactor dora to seria and delete SERI.

* Deleted old mex files not used anymore.

* Refactor mex files. C and matlab compiling.

* Refactoring the python code.

* Repaired bug in prosa.

* Updated cython code.

* Rename dora to seria.

* Deleted files that are no superficial.

* Deleted seri files from matlab.

* Working example of inversions.

* Working on improving examples.

* Working flat model.

* Working hier. mixed model.

* Started working on the implementation.

* Updated readme seria.

* Working on the documentation.

* Improved documentation.

* Small change.

* Documentation seria.

* Improved the documentation and some function.

* Update docs SERIA.

* Update documentation.

* Updated SERIA documentation.

* SERIA updated documentation.

* Update Documentation.

* Small change.

* Improved docs.

* small change.

* Update seri docs.

* small change.

* Indexed seria.

* SERIA docs.

* - Release PhysIO Toolbox R2018.1

* - added PhysIO to changelog

* Update CHANGELOG.md; line break and proper doi links everywhere

* PhysIO Release R2018.1.1 (bugfix, better documentation export)

* Implemented the reparametrization.

* Added functions to reparametrize.

* Updated implementation and remove small errors.

* Updated misc and log file.

* Refactor prosa and seria multi.

* Refactor the mex functions.

* Miscelaneous tools.

* Improved the reparametrization of parameters.

* Small correction.

* Added checking for parameters.

* Updated version of the code.

* Added figures and updated docs.

* Updated to the mpdcm toolbox.

* Updated changelog.

* Updated change log.

* Update README.md; https for github links

* Update README.md; compatibility with Markdown format

* Update README.md; html link to tutorial

* Update README.txt; sync to .md...are both needed?

* Update README.md; link to Manual and some markdown conformities. Removed mentioning of old TAPAS version, since it does not contain rDCM

* Update README.md; adjusted to the one in the main folder...do we need both?

* Delete README.txt; duplicate of .md file

* Delete README.md

* Put ti and linear in tools directory.

New release of PhysIO

This release includes new models in the HGF toolbox and updates to th…

…e PhysIO toolbox.

This release includes the SERIA model as published in http://www.bior…

…xiv.org/content/early/2017/06/08/109090.

HGF Toolbox 5.0

This release includes a new toolbox for modeling the antisaccade task…

… and minor updates to the PHYSIO toolbox.

Paper version of PhysIO

HGF release 4.10

Changes to mpdcm

v2.1.0.0

Major Release of PhysIO for PhysIO Toolbox Paper

* Software version for Toolbox Paper submission
* Noise ROIs modeling
* Extended motion models (24 parameters, Volterra expansion)
* HRV/RVT models with optional multiple delay regressors
* Report_contrasts with automatic contrast generation for all regressor groups
* compute_tsnr_gains for individual physiological regressor groups
* consistent module naming (scan_timing, preproc)
* Visualisation improvement (color schemes, legends)