fix OR #251
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| name: test_coverage | |
| on: | |
| push: | |
| branches: | |
| - gcam-core | |
| - gcam-iamcompact | |
| - dev | |
| jobs: | |
| R-CMD: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { os: ubuntu-latest, r: 'devel', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{secrets.GH_GCAMREPORT_TOKEN}} | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - uses: r-lib/actions/setup-r@v2-branch | |
| with: | |
| r-version: '3.6' | |
| - uses: r-lib/actions/setup-pandoc@v2-branch | |
| - uses: r-lib/actions/setup-tinytex@v2-branch | |
| - name: Install libraries | |
| if: startsWith(matrix.config.os, 'ubuntu') | |
| run: | | |
| sudo apt-add-repository ppa:ubuntugis/ubuntugis-unstable | |
| sudo apt-get update | |
| sudo apt-get install -y libcurl4-openssl-dev libssl-dev libxml2-dev libudunits2-dev libgdal-dev libgeos-dev libproj-dev libmagick++-dev libavfilter-dev libharfbuzz-dev libfribidi-dev | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("remotes","rcmdcheck"), repos = "https://cloud.r-project.org") | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_github("JGCRI/rpackageutils") | |
| shell: Rscript {0} | |
| # - name: Test coverage | |
| # run: | | |
| # install.packages(c("DT","htmltools","covr"), repos = "https://cloud.r-project.org") | |
| # remotes::install_deps(dependencies = TRUE) | |
| # cov <- covr::package_coverage() | |
| # covr:::report(cov, file = "coverage.xml") | |
| # shell: Rscript {0} | |
| - uses: codecov/codecov-action@v4.0.1 | |
| with: | |
| token: ${{secrets.CODECOV_TOKEN}} | |
| files: ./coverage.xml | |
| verbose: true |