initiate renv

bbartholdy · Feb 17, 2022 · 2509e1e · 2509e1e
1 parent 9d49f2f
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diff --git a/.Rbuildignore b/.Rbuildignore
@@ -1,2 +1,7 @@
+^renv$
+^renv\.lock$
+^.*\.Rproj$
+^\.Rproj\.user$
 ^LICENSE\.md$
 ^\.github$
+^CHANGELOG\.md$
diff --git a/.Rprofile b/.Rprofile
@@ -0,0 +1 @@
+source("renv/activate.R")
diff --git a/.gitignore b/.gitignore
@@ -3,4 +3,4 @@
 .RData
 .Ruserdata
 *_files
-_book
+_book/
diff --git a/01-intro.Rmd b/01-intro.Rmd
@@ -3,12 +3,15 @@
 <!-- chapter status badge -->
 ![](https://img.shields.io/badge/status-writing-blue)
 
-<!-- dental calculus in context -->
+An introduction to the dissertation where I put the study of dental calculus
+in context, as well as provide the outline and structure of the dissertation.
+
+<!-- dental calculus in context 
 
 
 ## Archaeological applications
 
-<!-- various archaeological applications of dental calculus -->
+<!-- various archaeological applications of dental calculus 
 
 
 ## Thesis outline and structure

diff --git a/02-background.Rmd b/02-background.Rmd
@@ -2,11 +2,14 @@
 <!-- chapter status badge -->
 ![](https://img.shields.io/badge/status-writing-blue)
 
+An introduction to biofilms.
+
 <!-- dental calculus background? -->
 
+<!--
 ## Oral biofilms
 
-<!-- brief intro to oral biofilms -->
+<!-- brief intro to oral biofilms 
 
 
 ## Oral biofilm models

diff --git a/DESCRIPTION b/DESCRIPTION
@@ -7,8 +7,7 @@ Authors@R:
 Description: What the package does (one paragraph).
 Imports: 
     bookdown
-License: `use_mit_license()`, `use_gpl3_license()` or friends to pick a
-    license
+License: CC BY 4.0
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.1.2
-Original file line number
+Diff line change
@@ Expand Up / @@ -3,4 +3,4 @@ @@
     .RData
     .Ruserdata
     *_files
-    _book
+    _book/