[9.0.0] Starting with Bazel 8.3.0, `archive_override` removes all files from the archive root

[bazel-io]

Forked from #26450

[bazel-io]

Cherry-pick was attempted but there were merge conflicts in the following file(s). Please resolve manually.

src/main/java/com/google/devtools/build/lib/skyframe/SequencedSkyframeExecutor.java

cc: @bazelbuild/triage

[Wyverald]

#28191