Search results

Replace SAM file intermediates with BAM files

coding-project

Status: Open.

#222 In barricklab/breseq;

· jeffreybarrick opened on Nov 5, 2019

Compare across samples to improve predictions of low-frequency variants

coding-project

Status: Open.

#221 In barricklab/breseq;

· jeffreybarrick opened on Oct 11, 2019

Summarizing data quality/coverage across many runs

coding-project

Status: Open.

#219 In barricklab/breseq;

· jeffreybarrick opened on Oct 2, 2019

Treatment similarity/specificity statistics

coding-project

Status: Open.

#217 In barricklab/breseq;

· jeffreybarrick opened on Sep 28, 2019

Phylogenetic tree generation

coding-project

Status: Open.

#216 In barricklab/breseq;

· jeffreybarrick opened on Sep 27, 2019

Utility for de novo assembly of unmapped reads

coding-project

Status: Open.

#215 In barricklab/breseq;

· jeffreybarrick opened on Sep 27, 2019

Predict structural variation from mate-pair mapping

coding-project

Status: Open.

#214 In barricklab/breseq;

· jeffreybarrick opened on Sep 27, 2019

Update/improve Circos visualization

coding-project

Status: Open.

#213 In barricklab/breseq;

· jeffreybarrick opened on Sep 21, 2019

Detect discontinuity (soft-clipping) evidence

coding-project

Status: Open.

#212 In barricklab/breseq;

· jeffreybarrick opened on Sep 21, 2019

Add interactivity to HTML output

coding-project

Status: Open.

#211 In barricklab/breseq;

· jeffreybarrick opened on Sep 21, 2019

Parallelize breseq execution

coding-project

Status: Open.

#210 In barricklab/breseq;

· jeffreybarrick opened on Sep 21, 2019

Predict copy number variation (amplifications)

coding-project

enhancement

Status: Open.

#208 In barricklab/breseq;

· jeffreybarrick opened on Sep 20, 2019