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@bacpop

Bacterial population genetics

Pathogen Informatics and Modelling @ EMBL-EBI / Bacterial Evolutionary Epidemiology Group @ Imperial College London

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  1. PopPUNK PopPUNK Public

    PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

    Python 100 19

  2. ggCaller ggCaller Public

    Bifrost graph gene caller.

    C++ 95 6

  3. ska.rust ska.rust Public

    Split k-mer analysis – version 2

    Rust 92 6

  4. unitig-caller unitig-caller Public

    Methods to determine sequence element (unitig) presence/absence

    C++ 21 3

  5. PopPIPE PopPIPE Public

    Population analysis PIPEline 🛠🧬

    Python 22 6

  6. sketchlib.rust sketchlib.rust Public

    Fast sequence distance estimates

    Rust 15 4

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