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README.md
README.md
 
 
_config.yml
_config.yml
 
 
asc_manual_2018.pdf
asc_manual_2018.pdf
 
 
asc_queue_description.pdf
asc_queue_description.pdf
 
 
asc_queue_system_tutorial.pdf
asc_queue_system_tutorial.pdf
 
 
cheatsheet_awk.pdf
cheatsheet_awk.pdf
 
 
cheatsheet_git.pdf
cheatsheet_git.pdf
 
 
cheatsheet_linux_cli.pdf
cheatsheet_linux_cli.pdf
 
 
cheatsheet_regex.pdf
cheatsheet_regex.pdf
 
 
cheatsheet_scripting.pdf
cheatsheet_scripting.pdf
 
 
cheatsheet_sed.pdf
cheatsheet_sed.pdf
 
 
computational_biology_primer.pdf
computational_biology_primer.pdf
 
 
hitch_hiker_quote.txt
hitch_hiker_quote.txt
 
 
homework.md
homework.md
 
 
linux_for_bioinformatics.pdf
linux_for_bioinformatics.pdf
 
 
r-studio-slides.html
r-studio-slides.html
 
 
remote_computer.md
remote_computer.md
 
 
samtools.depth.out.zip
samtools.depth.out.zip
 
 
tabular_data_example.txt
tabular_data_example.txt
 
 
using_asc_windows.md
using_asc_windows.md
 
 
vim_cheatsheet.pdf
vim_cheatsheet.pdf
 
 

Repository files navigation

SCHEDULE

Pre-bootcamp

Homework

Using ASC For Windows Users

Accessing Remote Computer

ASC Queue System Tutorial

Exercises

Exercise-1

Exercise-2

Exercise-3

Exercise-4

Exercise-5

Exercise-6

Exercise-7

Exercise-8

Exercise-9

Exercise-10

Lecture Slides

Monday

Sequencing Technology

Assembly

Bash scripting

Tuesday

Text Parsing

Contig Assessment

MITOS

Trinotate

Wednesday

Mapping

Variant Calling

Thursday

Differential Expression

Intro to Git

Friday

Interactive Genome Viewer

R Studio

Archiving Sequence Data

Articles

So you want to be a computational biologist?

An introduction to Linux for bioinformatics

Resources

Alabama Super Computer Manual

Alabama Super Computer Queue

Alabama Super Computer Queue Tutorial

AWK Cheatsheet

Git Cheatsheet

Linux Command Line Cheatsheet

Regular Expressions Cheatsheet

Scripting Cheatsheet

Sed Cheatsheet

Vim Cheatsheet

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Homepage for Auburn University Bioinformatics Bootcamp

au-bio-bootcamp.github.io

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