InterMine

Master: Dev: f A powerful open source data warehouse system. InterMine allows users to integrate diverse data sources with a minimum of effort, providing powerful web-services and an elegant web-application with minimal configuration. InterMine powers some of the largest data-warehouses in the life sciences, including:

• FlyMine
• HumanMine
• MouseMine
• YeastMine
• ZebrafishMine
• RatMine
• TargetMine
• ThaleMine
• PhytoMine

For the full list of InterMines, please see the registry

For details, please visit: InterMine Documentation

If you run an InterMine, or use one in your research, in order to improve the chance of continued funding for the project it would be appreciated if groups that use InterMine or parts of InterMine would let us know.

Getting Started With InterMine

For a guide on getting started with InterMine, please visit: tutorial

3min bootstrap

As long as you have the prerequisites installed (Java, PostgreSQL), you can get a working data-warehouse and associated web-application by running an automated bootstrap script:

  # For the testmodel
./testmine/setup.sh

For a genomic application, with test data from Malaria, see BioTestMine

Docker

You can build InterMine using Docker. See https://github.com/intermine/docker-intermine-gradle

Copyright and Licence

Copyright (C) 2002-2022 FlyMine

See LICENSE file for licensing information.

This product includes software developed by the Apache Software Foundation

InterMine Development Roadmap

For more information about the upcoming releases, please visit the InterMine Development Roadmap. For the roadmap, please see here.

Please cite

InterMine: extensive web services for modern biology.
Kalderimis A, Lyne R, Butano D, Contrino S, Lyne M, Heimbach J, Hu F, Smith R, Stěpán R, Sullivan J, Micklem G.
Nucleic Acids Res. 2014 Jul; 42 (Web Server issue): W468-72

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data.
Smith RN, Aleksic J, Butano D, Carr A, Contrino S, Hu F, Lyne M, Lyne R, Kalderimis A, Rutherford K, Stepan R, Sullivan J, Wakeling M, Watkins X, Micklem G.
Bioinformatics (2012) 28 (23): 3163-3165.

See zotero for the full list of InterMine publications.