release prep - #1
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- Change license to Apache-2.0 for CRAN redistribution compliance - Bump version to 0.1.0 for first release - Rewrite DESCRIPTION title/description, add SystemRequirements and cph role - Move logrx from Imports to Suggests (not used in R/ code) - Fix .onLoad to not overwrite user-set options - Change default abba.home.nfs.ip.address from hardcoded IP to NULL - Protect setwd() calls with on.exit() in read_rproj.R and inst/logrx_workbench_submission.R - Add file.exists() guard for /etc/rstudio/r-versions - Handle NULL home_nfs_ip_address in configure_yaml.R - Remove dplyr dependency from submit_job_slurm.R (use base R subsetting) - Remove piped . usage in slurm_utils.R - Add missing @examples to 7 exported functions - Fix @return on create_batch, escape braces in Rd - Document working_dir and ... params in abba_slurm_submit_job - Replace installed.packages() with requireNamespace() in inst/ template - Add rsconnect/, test_programs/, .claude/, CLAUDE.md to .Rbuildignore - Fix broken Posit URLs in vignettes - Fix _pkgdown.yml typo in function reference - Fix test portability: tempdir() instead of /tmp/, httr2 header weak refs - Add NEWS.md and CLAUDE.md R CMD check --as-cran passes with 1 NOTE (new submission). Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
- R-CMD-check across Windows, macOS, and Ubuntu (release + devel) - pkgdown site build and deployment to GitHub Pages - R-hub multi-platform checks (manual dispatch) - Test coverage with codecov integration - Add .github to .Rbuildignore Workflows match atorus-research/clinify configuration. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Welcome to Codecov 🎉Once you merge this PR into your default branch, you're all set! Codecov will compare coverage reports and display results in all future pull requests. Thanks for integrating Codecov - We've got you covered ☂️ |
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
- Remove rsconnect/, plumber.R, notes.md from git tracking (contain internal server URLs, Azure Container Registry paths, IP addresses) - Add them to .gitignore to prevent re-addition - Replace real registry URL and username path in k8s_job_submission vignette - Add *.Rcheck/ and *.tar.gz to .gitignore Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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Summary
SystemRequirements,cphrole, movedlogrxtoSuggests.onLoadno longer overwrites user options,setwd()protected withon.exit(), hardcoded internal IP removed,dplyrdependency eliminated, broken vignette URLs fixed@examplesto 7 exported functions, fixed@return/@paramgaps, addedNEWS.mdrsconnect/,test_programs/,.github/to.RbuildignoreR CMD check --as-cranpasses with 1 NOTE (new submission).Test plan
R CMD check --as-cranpasses locally (1 NOTE only: new submission)