Merge pull request #290 from brentp/readme

link to smoove
arq5x · Feb 13, 2019 · 800c67c · 800c67c
2 parents e44bcbd + 2ceb55c
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diff --git a/README.md b/README.md
@@ -27,6 +27,10 @@ Genome Biology 15 (6): R84.
 
 ## Quick start
 
+Note that [smoove](https://github.com/brentp/smoove) is the recommended way to run `lumpy` as it collects the
+best-practices of `lumpy` and associated tools and will have a shorter run-time and lower false-positive rate than
+`lumpyexpress` described below. 
+
 Download and install
 ```
 git clone --recursive https://github.com/arq5x/lumpy-sv.git