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arnaudporet Follow

Overview Repositories 9 Projects 0 Packages 0 Stars 11

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arnaudporet

Arnaud Poret arnaudporet

3 followers · 1 following

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Overview Repositories 9 Projects 0 Packages 0 Stars 11

Overview
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pathrider Public

Finding paths of interest in networks

paths graphs computational-biology pathfinding networks shortest-paths signaling-pathways

Go 3 2 GNU General Public License v3.0 Updated May 14, 2022
kali Public

In silico therapeutic target discovery using network attractors: avoiding pathological phenotypes

computational-biology drug-discovery biological-networks in-silico therapeutic-targets boolean-networks biological-simulation

Go 5 GNU General Public License v3.0 Updated May 14, 2022
kgml2sif Public

Converting KGML encoded KEGG pathways to the SIF file format

converter signaling-pathways pathways kegg biological-networks sif kgml-files

Python 2 1 GNU General Public License v3.0 Updated Sep 13, 2020
sbgn2sif Public

Converting SBGN encoded pathways to the SIF file format

converter signaling-pathways pathways reactome sbgn biological-networks sif

Python 2 2 Apache License 2.0 Updated Apr 22, 2020
konect Public archive

Connecting nodes

graph-algorithms graphs computational-biology pathfinding pathfinder networks shortest-paths

Go BSD 2-Clause "Simplified" License Updated Jul 10, 2019
stream Public archive

Streaming over networks

graph-algorithms graphs computational-biology pathfinding pathfinder networks network-analysis

Go BSD 2-Clause "Simplified" License Updated Jul 10, 2019
smoosim Public

Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations

simulation modeling computational-biology networks dynamical-systems fuzzy-logic biological-networks

R 3 BSD 2-Clause "Simplified" License Updated Apr 5, 2019
kali-sim Public archive

kali-sim was renamed smoosim and is now located at https://github.com/arnaudporet/smoosim.git

Updated May 16, 2017
kali-targ Public archive

kali-targ was renamed kali and is now located at https://github.com/arnaudporet/kali

Updated Jun 26, 2016

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Arnaud Poret arnaudporet

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pathrider Public

kali Public

kgml2sif Public

sbgn2sif Public

konect Public archive

stream Public archive

smoosim Public

kali-sim Public archive

kali-targ Public archive