Skip to content

compilation is not working  #97

Open
@CodeBlack589

Description

When running soapdenovo in my linux system its gives multiple definition of b_ban' usr/bin/ld: standardPregraph/attachPEinfo.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/bubble.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/check.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/compactEdge.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/concatenateEdge.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/connect.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/contig.o:(.bss+0x100): multiple definition of shortrdsfile'; sparsePregraph/global.o:(.bss+0x1e0): first defined here
/usr/bin/ld: standardPregraph/contig.o:(.bss+0x0): multiple definition of graphfile'; sparsePregraph/global.o:(.bss+0xe0): first defined here /usr/bin/ld: standardPregraph/contig.o:(.bss+0x200): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/cutTipPreGraph.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/cutTip_graph.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/cutTip_graph2.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/hashFunction.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/iterate.o:(.bss+0x48): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/kmer.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/kmerhash.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/lib.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/linearEdge.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/loadGraph.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/loadPath.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/loadPreGraph.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/localAsm.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/main.o:(.bss+0x32c): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/map.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/mem_manager.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/newhash.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/node2edge.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/orderContig.o:(.bss+0xc): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/output_contig.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/output_pregraph.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/output_scaffold.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/pregraph.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/prlHashCtg.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/prlHashReads.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/prlRead2Ctg.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/prlRead2path.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/prlReadFillGap.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/read2edge.o:(.bss+0x0): multiple definition of locks'; sparsePregraph/global.o:(.bss+0x70): first defined here /usr/bin/ld: standardPregraph/read2edge.o:(.bss+0x40): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/read2scaf.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/readInterval.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/readseq1by1.o:(.bss+0x8): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/scaffold.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/searchPath.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: standardPregraph/seq.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here
/usr/bin/ld: standardPregraph/splitReps.o:(.bss+0x0): multiple definition of b_ban'; standardPregraph/arc.o:(.bss+0x0): first defined here /usr/bin/ld: ./sparsePregraph/inc/libbam.a(bam.o): relocation R_X86_64_32 against .rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE
/usr/bin/ld: failed to set dynamic section sizes: bad value
collect2: error: ld returned 1 exit status
make: *** [Makefile:58: SOAPdenovo-63mer] Error 1

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions