Skip to content

cannot open *.kmerFreq file after pregraph, then exit #93

Open
@cqh1

Description

My command:

SOAPdenovo-63mer all -s config_file -K 31 -R -o soapdenovo_asm 1>ass.log 2>ass.err

config_file:

max_rd_len=100
[LIB]
avg_ins=200reverse_seq=0
asm_flags=3
rd_len_cutoff=100
rank=1
pair_num_cutoff=3
map_len=32
q1=/mnt/hgfs/ubt22share/2.HQdata1/data/CDC012_R1.fq.gz
q2=/mnt/hgfs/ubt22share/2.HQdata1/data/CDC012_R2.fq.gz

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions