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Pull requests: aqlaboratory/openfold-3

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Pull requests list

Raise FileExistsError if colabfold raw directory is found before performing colabfold alignments
#233 opened May 28, 2026 by jnwei Contributor Loading…
1 task done
1
1
Chunk large LayerNorm inputs to work around torch bug
#231 opened May 26, 2026 by GMNGeoffrey Contributor Loading…
1
Make config chunk_size maximum rather than minimum safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#227 opened May 20, 2026 by GMNGeoffrey Contributor Loading…
18
Treat arg-cache length mismatch as a cache miss in ChunkSizeTuner
#224 opened May 18, 2026 by GMNGeoffrey Contributor Loading…
1
Install py-lmdb from conda + unpin python + create openfold3-msa safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#222 opened May 17, 2026 by sdvillal Contributor Loading…
@sdvillal
19
Avoid flattening and expanding broadcast dimensions when chunking
#213 opened May 5, 2026 by GMNGeoffrey Contributor Loading…
2
2
Replace scipy's truncnorm.rvs with nn.init.trunc_normal_ to make model load faster safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#178 opened Apr 13, 2026 by rizsp Contributor Loading…
@rizsp
11
use torch.gather() to make batched_gather() more efficient enhancement New feature or request model Related to the model definition sketch This is an idea/sketch rather than a mergeable PR, significant work needed to advance needed training Relating to the training pipeline
#135 opened Mar 14, 2026 by OccupyMars2029 • Draft
3
Fix organometallic conformer gen and custom CCD support
#132 opened Mar 10, 2026 by ljarosch Collaborator • Draft
2
28
Fix check_sequence filter
#80 opened Dec 28, 2025 by gnikolenyi Collaborator Loading…
1
6
feat(inference): Add support for custom residue numbering (resolves #58)
#69 opened Dec 6, 2025 by chodec Contributor Loading…
16
Preserve Raw ColabFold MSA Output Files
#35 opened Nov 12, 2025 by qurat-ul-ain95 Contributor Loading…
1
7
ProTip! Updated in the last three days: updated:>2026-05-25.