fixed confa package configuration

README.md

@@ -204,7 +204,7 @@ Here we list workarounds for some typical problems connected with running the re
 
 1) error trying to exec 'cc1plus': exe: No such file or directory
 
-Such error emerges when g++ is not installed and pip version of shap package is used (they publish conda version with delay, so we currently have it as pip dependency)
+Such error emerges when g++ is not installed:
 The workaround is simple:
 ```
 sudo apt install g++

conda-recipe/meta.yaml

@@ -1,6 +1,6 @@
 package:
   name: yspecies
-  version: 0.2.2
+  version: 0.3.0
 channels:
   - conda-forge
   - bioconda
@@ -13,15 +13,16 @@ requirements:
     - numpy>=1.18.5
     - python=3.8
     - pandas>=1.0.5
-    - more-itertools>=8.4.0
+    - anaconda-client>=1.7.2
     - scikit-learn>=0.23.2
     - seaborn>=0.10.1
-    - shap>=0.35.0
-    - lightgbm>=3.0.0
+    - more-itertools>=8.4.0
+    - lightgbm>=3.1.1
     - statsmodels>=0.11.1
-    - optuna>=2.0.0
+    - optuna>=2.3.0
     - loguru>=0.5.0
-    #- pyrsistent>=0.16.0
+    - plotly>=4.14.1
+    - shap>=0.37.0
 test:
   imports:
     - yspecies

environment.yaml

@@ -21,9 +21,6 @@ dependencies:
   - click>=7.1.2
   - loguru>=0.5.0
   - plotly>=4.14.1
-  - pip
-  - pip:
-      - interpret>=0.2.2 #for experimental notebooks with explained boosting machines
-      - shap>=>0.37.0
+  - shap>=0.37.0
 prefix: /data/miniconda3/envs/species