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One nice novel feature:
- MTG-Link can now process Indels (both insertions and deletions)
- Script 'vcf2gfa.py': convert a VCF file containing Indels sites to a GFA file
- MTG-Link can now process Indels (both insertions and deletions)
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Some improvements:
- More recent versions of LRez and MindTheGap can be used (see file ‘requirements.txt’)
- A fixed flanking size is used for the barcodes extraction step (e.g. even if the flanking size is larger than the length of the flanking scaffold, barcodes are extracted on the whole flanking region)
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Some bug fixes:
- Script ‘qualitativeEvaluation.py’: if length(flankingScaffold) < extSize, then the extension size on the corresponding flanking scaffold is set to the length of this flanking scaffold
- Correct minor bugs