Skip to content

Commit

Permalink
doc: VDJ_analysis README minor formatting changes
Browse files Browse the repository at this point in the history
  • Loading branch information
JonathanRob committed Oct 13, 2020
1 parent 8417a26 commit feb5904
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion scripts/VDJ_analysis/README.md
Original file line number Diff line number Diff line change
Expand Up @@ -24,7 +24,7 @@ Note that there is a `metadata.csv` file in the [`data/`](../../data) directory
| spleen14_3 | rna | v2 | M3 | infected | D14 | spleen | spleen14 |
| ... | ... | ... | ... | ... | ... | ... | ... |

If a different dataset is to be used, this `metadata.csv` file will need to be updated accordingly. It is important that the `dataset` column is present and the entries match the names of the folders in the [`data/VDJ_OTUs/`](../../data/VDJ_OTUs) directory. Also, the `mouse_nr` column must be present in order to combine datasets based on subject (mouse) when performing the clone assignment.
If a different dataset is to be used, this `metadata.csv` file will need to be updated accordingly. It is important that the **`dataset`** column is present and the entries match the names of the folders in the [`data/VDJ_OTUs/`](../../data/VDJ_OTUs) directory. Also, the **`mouse_nr`** column must be present in order to combine datasets based on subject (mouse) when performing the clone assignment.

The following sections describe each step of the VDJ workflow included in the `immcantation_VDJ_workflow.sh` bash script.

Expand Down

0 comments on commit feb5904

Please sign in to comment.