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doc: add readme for cellranger data subdirectory
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| # scRNA-seq Cellranger output files | ||
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| This directory should contain a folder for each sample (e.g., `lung0_2/`, `lung7_1`, `mln7_2`, consistent with the sample naming in the `metadata.csv` file in the parent `data/` directory), with each folder containing the following outputs from the cellranger pipeline: `barcodes.tsv`, `genes.tsv`, `matrix.mtx`. | ||
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| The directory contents should be organized as follows: | ||
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| ``` | ||
| cellranger | ||
| |-- README.md | ||
| |-- lung0_2 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- lung14_2 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- lung14_3 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- lung28_1 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- lung28_2 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- lung28_3 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- lung7_1 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- mln14_1 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- mln14_2 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- mln14_3 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- mln28_1 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- mln28_2 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- mln28_3 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- mln7_1 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- mln7_2 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- spleen0_1 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- spleen0_2 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- spleen14_1 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- spleen14_2 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- spleen14_3 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- spleen28_1 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- spleen28_2 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| |-- spleen7_1 | ||
| | |-- barcodes.tsv | ||
| | |-- genes.tsv | ||
| | `-- matrix.mtx | ||
| `-- spleen7_2 | ||
| |-- barcodes.tsv | ||
| |-- genes.tsv | ||
| `-- matrix.mtx | ||
| ``` |