Update gsd requirement from <3.0,>=1.0 to >=1.0,<5.0

[dependabot]

Updates the requirements on gsd to permit the latest version.

Release notes

Sourced from gsd's releases.

v4.0.0

Fixed:

• Type hints for HoomdTrajectory._read_frame and downstream methods are now correct (#417).
• Sync changes to disk on macOS (#429).
• Sync index entries to disk before returning from flush (#429).
• Work around macOS bug that mysteriously allocated 16 MB of extra disk blocks beyond the end of the file (#429).

Changed:

• No longer test with clang 10, 11, or 12 (#422).
• [breaking] end_frame, find_chunk, find_matching_chunk_names, and read_chunk no longer implicitly call flush. The caller must manually call flush (or close the file) before chunks can be read. This behavior extends to the high level gsd.hoomd Python API (#429).
• Set the default write buffer to 1 MB (#429).

Removed:

• index_entries_to_buffer (#429).

Changelog

Sourced from gsd's changelog.

4.0.0 (2025-06-26) ^^^^^^^^^^^^^^^^^^

Fixed:

• Type hints for HoomdTrajectory._read_frame and downstream methods are now correct ([#417](https://github.com/glotzerlab/gsd/issues/417) <https://github.com/glotzerlab/gsd/pull/417>__).
• Sync changes to disk on macOS ([#429](https://github.com/glotzerlab/gsd/issues/429) <https://github.com/glotzerlab/gsd/pull/429>__).
• Sync index entries to disk before returning from flush ([#429](https://github.com/glotzerlab/gsd/issues/429) <https://github.com/glotzerlab/gsd/pull/429>__).
• Work around macOS bug that mysteriously allocated 16 MB of extra disk blocks beyond the end of the file ([#429](https://github.com/glotzerlab/gsd/issues/429) <https://github.com/glotzerlab/gsd/pull/429>__).

Changed:

• No longer test with clang 10, 11, or 12 ([#422](https://github.com/glotzerlab/gsd/issues/422) <https://github.com/glotzerlab/gsd/pull/422>__).
• [breaking] end_frame, find_chunk, find_matching_chunk_names, and read_chunk no longer implicitly call flush. The caller must manually call flush (or close the file) before chunks can be read. This behavior extends to the high level gsd.hoomd Python API ([#429](https://github.com/glotzerlab/gsd/issues/429) <https://github.com/glotzerlab/gsd/pull/429>__).
• Set the default write buffer to 1 MB ([#429](https://github.com/glotzerlab/gsd/issues/429) <https://github.com/glotzerlab/gsd/pull/429>__).

Removed:

• index_entries_to_buffer ([#429](https://github.com/glotzerlab/gsd/issues/429) <https://github.com/glotzerlab/gsd/pull/429>__).

3.x

3.4.2 (2024-11-13) ^^^^^^^^^^^^^^^^^^

Fixed:

• Make NumPy 2.0 requirement optional ([#405](https://github.com/glotzerlab/gsd/issues/405) <https://github.com/glotzerlab/gsd/pull/405>__).

3.4.1 (2024-10-21) ^^^^^^^^^^^^^^^^^^

Fixed:

• Prevent downgrading file versions when opening in write mode.

... (truncated)

Commits

• dd01984 Merge pull request #431 from glotzerlab/release-4.0.0
• 857782d Bump documentation build dependencies.
• c92305a Remove duplicate contributors.
• 8d9ec1f Set 4.0 release date.
• 16331e5 Bump version to 4.0.0.
• b0024e7 Merge pull request #429 from glotzerlab/adjust-default-buffer
• 9280012 Make the implicit call to gsd_flush more explicit in the gsd_close docs.
• ca1a872 Remove commented code.
• be96b7b Clarify units for the default write buffer size.
• cc7cd7b Validate array shape in index expansion test.
• Additional commits viewable in compare view

Most Recent Ignore Conditions Applied to This Pull Request

Dependency Name	Ignore Conditions
gsd	[>= 3.a, < 4]

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