This repo contains scripts necessary to reproduce all of the analyses conducted in our forthcoming paper examining population structure across extant Alligator Snapping Turtles. The raw VCF that is subsetted for each of the analyses is available on Dryad. The scripts and tutorials assume you save this VCF in a folder called raw_data.
If you use these scripts or analyses in your work, please cite the original program's creators, and:
Apodaca, JJ, A. Krohn, L. Collins, J. Godwin, L. Pearson, and A. Walde. 2023. Population Structure and Genetic Differentiation in Extant Alligator Snapping Turtles (genus Macrochelys) with Implications for Taxonomy and Conservation. Southeastern Naturalist 22(sp12):1-24 https://doi.org/10.1656/058.022.0sp1201