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Integrate MGI Loss-of-Function Phenotype Data into TSUMUGI
request💡New feature or requestNew feature or requestStatus: Open.#188 In akikuno/TSUMUGI-dev;Automate TSUMUGI Updates for New IMPC and External Database Releases
request💡New feature or requestNew feature or requestStatus: Open.#185 In akikuno/TSUMUGI-dev;Optimize thresholds for
shared_annotations >= 3andphenotype_similarity_score >= 1request💡New feature or requestNew feature or requestStatus: Open.#178 In akikuno/TSUMUGI-dev;Enable extraction of gene networks with opposite phenotypic effects
request💡New feature or requestNew feature or requestStatus: Open.#169 In akikuno/TSUMUGI-dev;Update
graphml_builderto use effect size for node phenotypes and clarify edge annotationcommand-line⌘command-line toolscommand-line toolsrequest💡New feature or requestNew feature or requestStatus: Open.#164 In akikuno/TSUMUGI-dev;Profile and optimize slow GraphML export in
tsumugi build-graphmlcommand-line⌘command-line toolscommand-line toolsrequest💡New feature or requestNew feature or requestStatus: Open.#163 In akikuno/TSUMUGI-dev;tsumugi -mp の 複数 MP term の受付対応
command-line⌘command-line toolscommand-line toolsrequest💡New feature or requestNew feature or requestStatus: Open.#162 In akikuno/TSUMUGI-dev;Does Phenotypic Effect Size Reflect Upstream–Downstream Gene Hierarchy?
project🎯A matter that concerns the core of the projectA matter that concerns the core of the projectquestion❓Further information is requestedFurther information is requestedStatus: Open.#159 In akikuno/TSUMUGI-dev;Add centrality calculation to the command-line interface
command-line⌘command-line toolscommand-line toolsrequest💡New feature or requestNew feature or requestStatus: Open.#131 In akikuno/TSUMUGI-dev;Highlight homologous genes within modules
request💡New feature or requestNew feature or requestweb🎨Web app and its user interfaceWeb app and its user interfaceStatus: Open.#126 In akikuno/TSUMUGI-dev;Support input of ontology/pathway terms (e.g., GO, KEGG) to visualize associated phenotype-similar gene modules
request💡New feature or requestNew feature or requestweb🎨Web app and its user interfaceWeb app and its user interfaceStatus: Open.#116 In akikuno/TSUMUGI-dev;MPOの日本語対応
maintenance✨️Code clarity and maintenanceCode clarity and maintenancerequest💡New feature or requestNew feature or requestStatus: Open.#41 In akikuno/TSUMUGI-dev;