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I added the
copyargument in #180, to toggle in-place vs returned behaviour for the preprocessing functions. I preferred the nameinplace, but thought scanpy was usingcopy. Turns out they're not incredibly consistent (i'm seeinginplaceinfilter_cells, butcopyinlog1p), so if they're not consistent I'm taking the liberty to useinplace.This also adds tests for equivalence of using all pp functions with
inplace=Truevsinplace=False.