aertslab · casblaauw · Feb 5, 2026 · Dec 9, 2025 · Dec 10, 2025 · Dec 12, 2025
diff --git a/docs/_static/img/examples/bar_normalization_weights.png b/docs/_static/img/examples/bar_normalization_weights.png
diff --git a/docs/_static/img/examples/bar_prediction.png b/docs/_static/img/examples/bar_prediction.png
diff --git a/docs/_static/img/examples/bar_region.png b/docs/_static/img/examples/bar_region.png
diff --git a/docs/_static/img/examples/bar_region_predictions.png b/docs/_static/img/examples/bar_region_predictions.png
diff --git a/docs/_static/img/examples/contribution_scores.png b/docs/_static/img/examples/contribution_scores.png
diff --git a/docs/_static/img/examples/heatmap_correlations_predictions.png b/docs/_static/img/examples/heatmap_correlations_predictions.png
diff --git a/docs/_static/img/examples/heatmap_self_correlations.png b/docs/_static/img/examples/heatmap_self_correlations.png
diff --git a/docs/_static/img/examples/hist_distribution.png b/docs/_static/img/examples/hist_distribution.png
diff --git a/docs/_static/img/examples/locus_locus_scoring.png b/docs/_static/img/examples/locus_locus_scoring.png
diff --git a/docs/_static/img/examples/locus_track.png b/docs/_static/img/examples/locus_track.png
diff --git a/docs/_static/img/examples/locus_track_bw.png b/docs/_static/img/examples/locus_track_bw.png
diff --git a/docs/_static/img/examples/locus_track_pred.png b/docs/_static/img/examples/locus_track_pred.png
diff --git a/docs/_static/img/examples/patterns_contribution_scores.png b/docs/_static/img/examples/patterns_contribution_scores.png
diff --git a/docs/_static/img/examples/patterns_enhancer_design_steps_contribution_scores.png b/docs/_static/img/examples/patterns_enhancer_design_steps_contribution_scores.png
diff --git a/docs/_static/img/examples/patterns_enhancer_design_steps_predictions.png b/docs/_static/img/examples/patterns_enhancer_design_steps_predictions.png
diff --git a/docs/_static/img/examples/scatter_class_density.png b/docs/_static/img/examples/scatter_class_density.png
diff --git a/docs/_static/img/examples/violin_correlations.png b/docs/_static/img/examples/violin_correlations.png
diff --git a/docs/api/plotting/bar.md b/docs/api/plotting/bar.md
@@ -12,5 +12,6 @@ Bar plots to inspect per region ground truths and compare them to their predicti
 
     region
     region_predictions
+    prediction
     normalization_weights
 ```
diff --git a/docs/api/plotting/index.md b/docs/api/plotting/index.md
@@ -24,6 +24,7 @@ violin
     :toctree: _autosummary
 
     render_plot
+    create_plot
 ```
 
 ## Patterns: Contribution scores and Modisco results
@@ -49,6 +50,7 @@ violin
 .. autosummary::
     bar.region
     bar.region_predictions
+    bar.prediction
     bar.normalization_weights
 ```
 

diff --git a/pyproject.toml b/pyproject.toml
@@ -37,6 +37,7 @@ dependencies = [
   "seaborn",
   "tqdm",
   "wandb>=0.12.10",
+  "scipy",
 ]
 
 optional-dependencies.dev = [

diff --git a/src/crested/pl/__init__.py b/src/crested/pl/__init__.py
@@ -1,4 +1,4 @@
 """Init file for the pl module."""
 
 from . import bar, heatmap, hist, locus, patterns, scatter, violin
-from ._utils import render_plot
+from ._utils import create_plot, render_plot