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Fix headline and exclude tidyverse lib
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johannespiller committed Sep 18, 2024
1 parent 463ef44 commit 08ca968
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6 changes: 2 additions & 4 deletions vignettes/multi-state.Rmd
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
---
title: "Multi-State"
title: "Multi-State Modelling"
author: "Johannes Piller, Andreas Bender"
date: "`r Sys.Date()`"
output: rmarkdown::html_vignette
Expand Down Expand Up @@ -49,7 +49,6 @@ library(pammtools)
library(purrr)
library(mstate)
library(checkmate)
library(tidyverse)
library(dplyr)
data(prothr, package = "mstate")
Expand All @@ -66,11 +65,10 @@ Transforming the survival data `prothr` into piecewise exponential data, we can
```{r lib-ms-pammtools, echo = FALSE}
# load function as it is not yet included in the package
# devtools::load_all("C:/Users/ra63liw/Documents/98_git/pammtools-multi-state/pammtools")
# devtools::install("C:/Users/ra63liw/Documents/98_git/pammtools-multi-state/pammtools")
# source("C:/Users/ra63liw/Documents/98_git/pammtools-multi-state/pammtools/R/add-functions.R")
# source("C:/Users/ra63liw/Documents/98_git/pammtools-multi-state/pammtools/tmp/add_transition_probabilities.R")
library(checkmate)
library(tidyverse)
library(dplyr)
```
```{r ms-prothr-ped, echo = TRUE, dependson=c("lib-ms-pammtools")}
# not necessary, prothr already contains all possible transitions
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