RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

An example private modules library built using nf-core tooling

A DSL for data-driven computational pipelines

This repository contains code for the nf-raffle pipeline by Seqera, used to conduct raffles at events.

Nextflow training material

nf-test utility functions

Nextflow plugins index repository

Params validation plugin for Nextflow pipelines

Repository to host tool-specific module files for the Nextflow DSL2 community!

Python package with helper tools for the nf-core community.

Pipeline to fetch metadata and raw FastQ files from public and private databases

Assembly and binning of metagenomes

Code and files for the main nf-core website.

Test data to be used for automated testing with the nf-core pipelines

Infrastructure as code implementation of the seqeralabs/showcase Workspace in Tower Cloud

Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)

Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.

Aggregate results from bioinformatics analyses across many samples into a single report.

Renders a collection of sequences into a pangenome graph.

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

A minimal Nextflow workflow for testing infrastructure.

Please use the original pipeline http://github.com/nf-core/airrflow

Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)

Conda recipes for the bioconda channel.