- Warwick, UK
- @adamrtalbot
- in/adam-talbot-9040a826
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rnaseq Public
Forked from nf-core/rnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Nextflow MIT License UpdatedOct 23, 2024 -
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nf-modules-template Public
Forked from kenibrewer/nf-modules-templateNextflow MIT License UpdatedOct 23, 2024 -
nf-modules-demo Public
Forked from kenibrewer/nf-modules-demoAn example private modules library built using nf-core tooling
Nextflow MIT License UpdatedOct 23, 2024 -
nextflow Public
Forked from nextflow-io/nextflowA DSL for data-driven computational pipelines
Groovy Apache License 2.0 UpdatedOct 18, 2024 -
detect-nf-test-changes Public
Identify changes in Nextflow repo for CI testing
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nf-raffle Public
Forked from seqeralabs/nf-raffleThis repository contains code for the nf-raffle pipeline by Seqera, used to conduct raffles at events.
HTML UpdatedOct 1, 2024 -
training Public
Forked from nextflow-io/trainingNextflow training material
Nextflow Other UpdatedSep 25, 2024 -
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nft-utils Public
Forked from nf-core/nft-utilsnf-test utility functions
MIT License UpdatedAug 13, 2024 -
plugins Public
Forked from nextflow-io/pluginsNextflow plugins index repository
UpdatedAug 8, 2024 -
nf-validation Public
Forked from nextflow-io/nf-validationParams validation plugin for Nextflow pipelines
Groovy Apache License 2.0 UpdatedAug 7, 2024 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedAug 3, 2024 -
tools Public
Forked from nf-core/toolsPython package with helper tools for the nf-core community.
Python MIT License UpdatedAug 2, 2024 -
fetchngs Public
Forked from nf-core/fetchngsPipeline to fetch metadata and raw FastQ files from public and private databases
Groovy MIT License UpdatedJul 5, 2024 -
mag Public
Forked from nf-core/magAssembly and binning of metagenomes
Nextflow MIT License UpdatedMay 22, 2024 -
nf-co.re Public
Forked from nf-core/websiteCode and files for the main nf-core website.
PHP MIT License UpdatedMay 21, 2024 -
test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedMay 17, 2024 -
showcase Public
Forked from ejseqera/showcaseInfrastructure as code implementation of the seqeralabs/showcase Workspace in Tower Cloud
Shell Mozilla Public License 2.0 UpdatedMay 16, 2024 -
fastquorum Public
Forked from nf-core/fastquorumPipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
Nextflow MIT License UpdatedMay 15, 2024 -
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phageannotator Public
Forked from nf-core/phageannotatorPipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.
Nextflow MIT License UpdatedMar 5, 2024 -
MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
JavaScript GNU General Public License v3.0 UpdatedFeb 15, 2024 -
pangenome Public
Forked from nf-core/pangenomeRenders a collection of sequences into a pangenome graph.
Nextflow MIT License UpdatedFeb 8, 2024 -
sarek Public
Forked from nf-core/sarekAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Nextflow MIT License UpdatedJan 17, 2024 -
nf-canary Public
Forked from seqeralabs/nf-canaryA minimal Nextflow workflow for testing infrastructure.
Nextflow MIT License UpdatedJan 15, 2024 -
nf-core-airrflow Public
Forked from ggabernet/nf-core-airrflowPlease use the original pipeline http://github.com/nf-core/airrflow
Nextflow MIT License UpdatedDec 22, 2023 -
nf-aggregate Public
Forked from seqeralabs/nf-aggregatePipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)
HTML Mozilla Public License 2.0 UpdatedDec 13, 2023 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedOct 24, 2023