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### 1. Login to seqera.io | ||
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Log into Seqera Platform, either through a GitHub account, Google account, or an email address. | ||
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If an email address is provided, Seqera Cloud will send an authentication link to the email address to login with. | ||
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![Seqera Platform Cloud login](assets/sp-cloud-signin.gif) | ||
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### 2. Navigate into the seqeralabs/showcase Workspace | ||
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All resources in Seqera Platform live inside a Workspace, which in turn belong to an Organisation. Typically, teams of colleagues or collaborators will share one or more workspaces. All resources in a Workspace (i.e. pipelines, compute environments, datasets) are shared by members of that workspace. | ||
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Navigate into the `seqeralabs/showcase` Workspace. | ||
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![Seqera Labs Showcase Workspace](assets/go-to-workspace.gif) | ||
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### 3. TODO User settings | ||
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# Seqera Platform: Demonstration Walkthrough | ||
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Walkthrough documentation of [Seqera Platform](https://seqera.io/) | ||
--- | ||
![](assets/landing_page.png){ .right .image} | ||
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[:fontawesome-solid-user: Login to Seqera Platform](https://tower.nf/login){ .md-button } | ||
--- | ||
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--- | ||
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## Overview | ||
This guide provides a walkthrough of a standard Seqera Platform demonstration. The demonstration will describe how to add a pipeline to the Launchpad, launch a workflow with pipeline parameters, monitor a Run, and examine the run details in several different parts. The demonstration will also highlight key features such as the Pipeline Optimization, Data Explorer, and Compute Environment creation. | ||
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More specifically, this demonstration will focus on using the [nf-core/rnaseq](https://github.com/nf-core/rnaseq) pipeline as an example and executing the workflow on AWS Batch. | ||
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--- | ||
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## Requirements | ||
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- A [Seqera Platform Cloud](https://seqera.io/login) account | ||
- Access to a Workspace in Seqera Platform | ||
- :fontawesome-brands-aws: An [AWS Batch Compute Environment created in that Workspace](https://docs.seqera.io/platform/23.3.0/compute-envs/aws-batch) | ||
- The [nf-core/rnaseq](https://github.com/nf-core/rnaseq) pipeline repository | ||
- Samplesheet to create a Dataset on the Platform used to run minimal test RNAseq data (see [samplesheet_test.csv](./samplesheet_test.csv) file in this repository) | ||
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--- | ||
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## Sections | ||
[:material-check-circle:]() [Overview of the Platform](./demo_overview.md) <br/> | ||
[:material-check-circle:]() [Add a Pipeline to the Launchpad](./add_a_pipeline.md) <br/> | ||
[:material-check-circle:]() [Add a Dataset to Seqera Platform](./add_a_dataset.md) <br/> | ||
[:material-check-circle:]() [Launch a Pipeline](./launch_pipeline.md) <br/> | ||
[:material-check-circle:]() [Runs and Monitoring your workflow](./monitor_run.md) <br/> | ||
[:material-check-circle:]() [Examine the run and task details](./run_details.md) <br/> | ||
[:material-check-circle:]() [Resume a Pipeline](./resume_pipeline.md) <br/> | ||
[:material-check-circle:]() [Data Explorer](./data_explorer.md) <br/> | ||
[:material-check-circle:]() [Optimize your Pipeline](./pipeline_optimization.md) <br/> |
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