Add proteinfold dataset

adamrtalbot · May 23, 2023 · c47634f · c47634f
1 parent 9d65c23
commit c47634f
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Showing 3 changed files with 17 additions and 7 deletions.
diff --git a/datasets/proteinfold_sequences.csv b/datasets/proteinfold_sequences.csv
@@ -0,0 +1,3 @@
+sequence,fasta
+T1024,https://raw.githubusercontent.com/nf-core/test-datasets/proteinfold/testdata/sequences/T1024.fasta
+T1026,https://raw.githubusercontent.com/nf-core/test-datasets/proteinfold/testdata/sequences/T1026.fasta
diff --git a/datasets/proteinfold_sequences.json b/datasets/proteinfold_sequences.json
@@ -0,0 +1,7 @@
+{
+  "dataset": {
+    "name": "proteinfold_sequences",
+    "description": "Samplesheet containing links to fasta files required to test the nf-core/proteinfold pipeline from end-to-end.",
+    "mediaType": "text/csv"
+  }
+}
diff --git a/datasets/rnaseq_samples.csv b/datasets/rnaseq_samples.csv
@@ -1,8 +1,8 @@
 sample,fastq_1,fastq_2,strandedness
-WT_REP1,s3://nf-core-awsmegatests/rnaseq/input_data/minimal/GSE110004/SRR6357070_1.fastq.gz,s3://nf-core-awsmegatests/rnaseq/input_data/minimal/GSE110004/SRR6357070_2.fastq.gz,auto
-WT_REP1,s3://nf-core-awsmegatests/rnaseq/input_data/minimal/GSE110004/SRR6357071_1.fastq.gz,s3://nf-core-awsmegatests/rnaseq/input_data/minimal/GSE110004/SRR6357071_2.fastq.gz,auto
-WT_REP2,s3://nf-core-awsmegatests/rnaseq/input_data/minimal/GSE110004/SRR6357072_1.fastq.gz,s3://nf-core-awsmegatests/rnaseq/input_data/minimal/GSE110004/SRR6357072_2.fastq.gz,reverse
-RAP1_UNINDUCED_REP1,s3://nf-core-awsmegatests/rnaseq/input_data/minimal/GSE110004/SRR6357073_1.fastq.gz,,auto
-RAP1_UNINDUCED_REP2,s3://nf-core-awsmegatests/rnaseq/input_data/minimal/GSE110004/SRR6357074_1.fastq.gz,,reverse
-RAP1_UNINDUCED_REP2,s3://nf-core-awsmegatests/rnaseq/input_data/minimal/GSE110004/SRR6357075_1.fastq.gz,,reverse
-RAP1_IAA_30M_REP1,s3://nf-core-awsmegatests/rnaseq/input_data/minimal/GSE110004/SRR6357076_1.fastq.gz,s3://nf-core-awsmegatests/rnaseq/input_data/minimal/GSE110004/SRR6357076_2.fastq.gz,reverse
+WT_REP1,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357070_1.fastq.gz,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357070_2.fastq.gz,auto
+WT_REP1,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357071_1.fastq.gz,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357071_2.fastq.gz,auto
+WT_REP2,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357072_1.fastq.gz,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357072_2.fastq.gz,reverse
+RAP1_UNINDUCED_REP1,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357073_1.fastq.gz,,auto
+RAP1_UNINDUCED_REP2,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357074_1.fastq.gz,,reverse
+RAP1_UNINDUCED_REP2,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357075_1.fastq.gz,,reverse
+RAP1_IAA_30M_REP1,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357076_1.fastq.gz,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357076_2.fastq.gz,reverse