Add nf-core-proteinfold pipeline

adamrtalbot · Feb 28, 2023 · a4e2f07 · a4e2f07
1 parent a151312
commit a4e2f07
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Showing 2 changed files with 18 additions and 1 deletion.
diff --git a/pipelines/hello.json b/pipelines/hello.json
@@ -1,5 +1,5 @@
 {
-  "description": "Hello World test pipeline",
+  "description": "Hello World test pipeline.",
   "launch": {
     "pipeline": "https://github.com/nextflow-io/hello",
     "revision": "master",

diff --git a/pipelines/nf-core-proteinfold.json b/pipelines/nf-core-proteinfold.json
@@ -0,0 +1,17 @@
+{
+  "description": "",
+  "launch": {
+    "pipeline": "https://github.com/nf-core/proteinfold",
+    "revision": "1.0.0",
+    "configProfiles": [
+      "test_full"
+    ],
+    "userSecrets": [],
+    "workspaceSecrets": [],
+    "configText": "process {\n    errorStrategy = 'retry'\n    maxRetries = 1\n\n    withName: 'RUN_ALPHAFOLD2|RUN_ALPHAFOLD2_PRED|RUN_ALPHAFOLD2_MSA|COLABFOLD_BATCH' {\n        accelerator = 1\n        queue = 'TowerForge-6IOueWtY2YO2fmo4ES5M64-work'\n    }\n}",
+    "paramsText": "outdir: 's3://seqeralabs-showcase/nf-core-proteinfold/results_2023_02_20'\nuse_gpu: true",
+    "resume": false,
+    "pullLatest": false,
+    "stubRun": false
+  }
+}