OpenAD Plugin - Deep Search

This is a plugin for OpenAD

About Deep Search

Deep Search (aka DS4SD) is developed at IBM Research and leverages state-of-the-art AI methods to continuously collect, convert, enrich, and link large document collections. You can use it for both public and proprietary PDF documents.

ds4sd.github.io / GitHub / IBM Research

About this Plugin

This plugin exposes a subset of Deep Search functionality to the OpenAD client, more specifically:

• Finding molecules by similarity or substructure
• Scanning patents for molecules, or find patents containing a certain molecule
• List and search available Deep Search collections like arXiv abstracts, PubChem or USPTO patents and more

Installation

Regular installation:

pip install git+https://github.com/acceleratedscience/openad-plugin-ds

Installation for development:

git clone git@github.com:acceleratedscience/openad-plugin-ds.git
cd openad-plugin-ds
pip install -e .

Authentication

In order to use this plugin, you need an API key.

1. Sign up for a Deep Search account at ds4sd.github.io

2. Obtain your API key by clicking the Toolkit / API icon in the top right hand corner, then open the "HTTP" section and click the "Generate new API key" button

   

3. Use ds login or any Deep Search command to be prompted for your credentials.

   • Hostname: (Enter blank for default - https://sds.app.accelerate.science)
   • Email: Your email
   • API_key: Your API key

   You should get a message saying you successfully logged in.

   To reset your credentials, run ds reset login