abuendia
Follow
Stars
Taking off-the-shelf HF models and training them on EHR data
A modular framework for multimodal cross-cell-type transcriptional regulation models
Snakemake workflow for comparing E-G links to experimental data
Benchmarks for classification of genomic sequences
A beautiful, simple, clean, and responsive Jekyll theme for academics
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
Fast and accurate in silico inference of HLA genotypes from RNA-seq
Run current & prior versions of R using docker. rocker/r-ver, rocker/rstudio, rocker/shiny, rocker/tidyverse, and so on.
🐳 Dockerized WES pipeline for variants identification in mathced tumor-normal samples
Self-Contrastive Learning: Single-viewed Supervised Contrastive Framework using Sub-network (AAAI 2023)
Code for evaluating single cell foundation models scBERT and scGPT
PyTorch implementation of "Supervised Contrastive Learning" (and SimCLR incidentally)
Scrapping tool for GISAID data regarding SARS-CoV-2
Debug your GitHub Actions via SSH by using tmate to get access to the runner system itself.
Python package for machine learning for healthcare using a OMOP common data model
Notebooks using the Hugging Face libraries 🤗
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
FastAPI framework, high performance, easy to learn, fast to code, ready for production
Implementation of "Tracking without bells and whistles” and the multi-object tracking "Tracktor"
Multi-Object Tracking via DeepSORT
[IJCV-2021] FairMOT: On the Fairness of Detection and Re-Identification in Multi-Object Tracking
Joint Detection and Embedding for fast multi-object tracking
Best Practices, code samples, and documentation for Computer Vision.
Main development repository for GAP - Groups, Algorithms, Programming, a System for Computational Discrete Algebra